Gene detail information of Glyur003582s00035990.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G18860.10transducin family protein / WD-40 repeat family protein
NRXP_003541081.10PREDICTED: phospholipase A-2-activating protein-like [Glycine max]
COGYP_632305.15.00E-29hypothetical protein MXAN_4130 [Myxococcus xanthus DK 1622]
Swissprottr|Q3Y8L7|DAW1_CHLRE4.00E-24Dynein assembly factor with WDR repeat domains 1
trEMBLtr|I1LQ62|I1LQ62_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G04990.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold03582379014851+


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur003582s00035990.2PF00400.27WD4013451.70E-06
Glyur003582s00035990.2PF00400.27WD4052940.0018
Glyur003582s00035990.2PF00400.27WD40981330.00026
Glyur003582s00035990.2PF00400.27WD401762060.07
Glyur003582s00035990.2PF00400.27WD402132495.70E-05
Glyur003582s00035990.2PF00400.27WD402572860.071
Glyur003582s00035990.2PF09070.6PFU3053484.90E-08
Glyur003582s00035990.2PF08324.6PUL3746017.60E-45


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control12.607
SRR1783600control12.057
SRR1783602moderate drought stress9.817
SRR1811619moderate drought stress10.012

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain21.237
DRR006520Root Summer glycyrrhizin high producing strain20.707
DRR006521Root Winter glycyrrhizin high producing strain25.196
DRR006522Root Winter glycyrrhizin high producing strain23.530
DRR006523Root Summer glycyrrhizin low producing strain28.673
DRR006524Root Summer glycyrrhizin low producing strain29.523
DRR006525Leaf Summer glycyrrhizin high producing strain13.659
DRR006526Leaf Summer glycyrrhizin high producing strain12.451

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)36.155
SRR2868004Drought Stress(Tissue:root)35.234
SRR2967015Control (Tissue:root)29.432

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave16.829
SRR9715740Leave16.683
SRR9715741Leave16.379
SRR9715739Root8.804
SRR9715742Root18.961
SRR9715743Root18.321

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h23.918
SRR8749028MeJA induced 9h30.725
SRR8749029MeJA induced 9h20.714
SRR8749030Uninduced10.620
SRR8749031Uninduced9.308
SRR8749032Uninduced7.304

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root27.128
SRR8400027Control-Root27.854

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved