Gene detail information of Glyur003610s00041429.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G01520.12.00E-93RING/U-box superfamily protein
NRXP_004492434.14.87E-171PREDICTED: uncharacterized protein LOC101510339 isoform X2 [Cicer arietinum]
trEMBLtr|I1N2W9|I1N2W9_SOYBN3.00E-158Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G42920.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0361061269860+


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur003610s00041429.1PF13920.1zf-C3HC4_31582041.60E-09


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control2.172
SRR1783600control2.226
SRR1783602moderate drought stress2.498
SRR1811619moderate drought stress2.643

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain4.172
DRR006520Root Summer glycyrrhizin high producing strain4.212
DRR006521Root Winter glycyrrhizin high producing strain8.692
DRR006522Root Winter glycyrrhizin high producing strain8.145
DRR006523Root Summer glycyrrhizin low producing strain10.455
DRR006524Root Summer glycyrrhizin low producing strain10.723
DRR006525Leaf Summer glycyrrhizin high producing strain3.341
DRR006526Leaf Summer glycyrrhizin high producing strain2.777

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)6.319
SRR2868004Drought Stress(Tissue:root)9.575
SRR2967015Control (Tissue:root)9.879

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave2.394
SRR9715740Leave7.674
SRR9715741Leave4.075
SRR9715739Root0.786
SRR9715742Root2.649
SRR9715743Root3.489

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h17.513
SRR8749028MeJA induced 9h20.590
SRR8749029MeJA induced 9h23.633
SRR8749030Uninduced7.620
SRR8749031Uninduced13.120
SRR8749032Uninduced12.116

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root6.296
SRR8400027Control-Root5.170

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved