Gene detail information of Glyur003610s00041430.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G51880.2 | 2.00E-31 | high mobility group B1 |
| NR | XP_004492431.1 | 8.99E-72 | PREDICTED: high mobility group B protein 1-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|O49595|HMGB1_ARATH | 2.00E-60 | High mobility group B protein 1 |
| trEMBL | tr|I3T9K0|I3T9K0_LOTJA | 3.00E-71 | Uncharacterized protein {ECO:0000313|EMBL:AFK49192.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03610 | 12332 | 15675 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HMG |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003610s00041430.1 | PF00505.14 | HMG_box | 50 | 119 | 2.30E-25 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 245.941 |
| SRR1783600 | control | 244.794 |
| SRR1783602 | moderate drought stress | 316.146 |
| SRR1811619 | moderate drought stress | 311.110 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 277.636 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 270.340 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 347.075 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 335.789 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 365.885 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 341.680 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 116.065 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 112.359 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 305.854 |
| SRR2868004 | Drought Stress(Tissue:root) | 478.472 |
| SRR2967015 | Control (Tissue:root) | 488.867 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 181.258 |
| SRR9715740 | Leave | 211.728 |
| SRR9715741 | Leave | 244.110 |
| SRR9715739 | Root | 75.081 |
| SRR9715742 | Root | 221.195 |
| SRR9715743 | Root | 192.717 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 118.061 |
| SRR8749028 | MeJA induced 9h | 116.471 |
| SRR8749029 | MeJA induced 9h | 124.813 |
| SRR8749030 | Uninduced | 141.959 |
| SRR8749031 | Uninduced | 150.490 |
| SRR8749032 | Uninduced | 143.745 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 223.224 |
| SRR8400027 | Control-Root | 239.184 |