Gene detail information of Glyur003629s00038082.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G06860.10multifunctional protein 2
NRXP_004487834.10PREDICTED: peroxisomal fatty acid beta-oxidation multifunctional protein MFP2-like [Cicer arietinum]
COGYP_549387.16.00E-1063-hydroxyacyl-CoA dehydrogenase [Polaromonas sp. JS666]
Swissprottr|Q9ZPI5|MFP2_ARATH03-hydroxyacyl-CoA dehydrogenase
trEMBLtr|A0A072V5C1|A0A072V5C1_MEDTR0Glyoxysomal fatty acid beta-oxidation MFP-A protein {ECO:0000313|EMBL:KEH37224.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold036291734921514-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10527MFP2 EC:4.2.1.17 1.1.1.35 1.1.1.211 Fatty acid metabolism map01212
Fatty acid degradationmap00071
alpha-Linolenic acid metabolismmap00592


Gene Ontology

biological_process

GO:0006631  fatty acid metabolic process

GO:0008152  metabolic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0003824  catalytic activity

GO:0003857  3-hydroxyacyl-CoA dehydrogenase activity

GO:0016491  oxidoreductase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur003629s00038082.1PF00378.15ECH1891.50E-11
Glyur003629s00038082.1PF02737.133HCDH_N1623402.30E-59
Glyur003629s00038082.1PF00725.173HCDH3434364.90E-24


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control19.982
SRR1783600control19.879
SRR1783602moderate drought stress15.453
SRR1811619moderate drought stress15.327

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain21.976
DRR006520Root Summer glycyrrhizin high producing strain22.627
DRR006521Root Winter glycyrrhizin high producing strain3.792
DRR006522Root Winter glycyrrhizin high producing strain3.908
DRR006523Root Summer glycyrrhizin low producing strain14.000
DRR006524Root Summer glycyrrhizin low producing strain13.887
DRR006525Leaf Summer glycyrrhizin high producing strain8.790
DRR006526Leaf Summer glycyrrhizin high producing strain8.706

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)20.476
SRR2868004Drought Stress(Tissue:root)24.348
SRR2967015Control (Tissue:root)31.654

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave11.701
SRR9715740Leave9.908
SRR9715741Leave12.855
SRR9715739Root7.238
SRR9715742Root17.797
SRR9715743Root15.125

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h16.449
SRR8749028MeJA induced 9h21.114
SRR8749029MeJA induced 9h19.783
SRR8749030Uninduced11.369
SRR8749031Uninduced5.991
SRR8749032Uninduced4.927

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root24.915
SRR8400027Control-Root25.989

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved