Gene detail information of Glyur003686s00042132.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G61790.13.00E-156Protein with RING/U-box and TRAF-like domains
NRXP_007136524.10hypothetical protein PHAVU_009G052500g [Phaseolus vulgaris]
Swissprottr|Q84JL3|SINA3_ARATH0E3 ubiquitin-protein ligase SINAT3
trEMBLtr|V7AV92|V7AV92_PHAVU0E3 ubiquitin-protein ligase {ECO:0000256|RuleBase:RU201113}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold036861766521556-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K04506SIAH1 EC:2.3.2.27 Ubiquitin mediated proteolysis map04120
MAPK signaling pathway - flymap04013
Wnt signaling pathwaymap04310
p53 signaling pathwaymap04115


Gene Ontology

biological_process

GO:0006511  ubiquitin-dependent protein catabolic process

GO:0007275  multicellular organism development

GO:0016567  protein ubiquitination


cellular_component

GO:0005634  nucleus


molecular_function

GO:0004842  ubiquitin-protein transferase activity

GO:0005515  protein binding

GO:0008270  zinc ion binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur003686s00042132.1PF03145.11Sina1063051.30E-73


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control4.116
SRR1783600control4.110
SRR1783602moderate drought stress5.888
SRR1811619moderate drought stress5.834

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain5.421
DRR006520Root Summer glycyrrhizin high producing strain5.397
DRR006521Root Winter glycyrrhizin high producing strain23.575
DRR006522Root Winter glycyrrhizin high producing strain22.890
DRR006523Root Summer glycyrrhizin low producing strain6.422
DRR006524Root Summer glycyrrhizin low producing strain6.236
DRR006525Leaf Summer glycyrrhizin high producing strain6.453
DRR006526Leaf Summer glycyrrhizin high producing strain6.278

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)16.626
SRR2868004Drought Stress(Tissue:root)21.654
SRR2967015Control (Tissue:root)23.371

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave11.623
SRR9715740Leave14.789
SRR9715741Leave12.765
SRR9715739Root7.386
SRR9715742Root7.678
SRR9715743Root8.017

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h10.115
SRR8749028MeJA induced 9h8.817
SRR8749029MeJA induced 9h8.013
SRR8749030Uninduced9.828
SRR8749031Uninduced10.714
SRR8749032Uninduced10.879

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root15.982
SRR8400027Control-Root18.327

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved