Gene detail information of Glyur003713s00045403.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G44410.13.00E-35RING/U-box superfamily protein
NRKEH38153.17.79E-80zinc finger, C3HC4 type (RING finger) protein [Medicago truncatula]
Swissprottr|P93030|RMA2_ARATH2.00E-23E3 ubiquitin-protein ligase RMA2
trEMBLtr|A0A072V9S9|A0A072V9S9_MEDTR3.00E-80Zinc finger, C3HC4 type (RING finger) protein {ECO:0000313|EMBL:KEH38153.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0371360906988+


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10666RNF5 EC:2.3.2.27 Protein processing in endoplasmic reticulum map04141


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur003713s00045403.1PF13923.1zf-C3HC4_21281681.40E-08


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control3.081
SRR1783600control2.877
SRR1783602moderate drought stress2.574
SRR1811619moderate drought stress2.536

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain2.586
DRR006520Root Summer glycyrrhizin high producing strain3.081
DRR006521Root Winter glycyrrhizin high producing strain1.527
DRR006522Root Winter glycyrrhizin high producing strain1.490
DRR006523Root Summer glycyrrhizin low producing strain1.210
DRR006524Root Summer glycyrrhizin low producing strain1.115
DRR006525Leaf Summer glycyrrhizin high producing strain0.886
DRR006526Leaf Summer glycyrrhizin high producing strain0.883

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)5.193
SRR2868004Drought Stress(Tissue:root)4.797
SRR2967015Control (Tissue:root)5.270

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.399
SRR9715740Leave0.521
SRR9715741Leave0.748
SRR9715739Root0.112
SRR9715742Root0.726
SRR9715743Root0.682

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.957
SRR8749028MeJA induced 9h1.495
SRR8749029MeJA induced 9h0.157
SRR8749030Uninduced0.611
SRR8749031Uninduced1.415
SRR8749032Uninduced0.742

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root3.822
SRR8400027Control-Root3.810

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved