Gene detail information of Glyur003721s00043779.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G38280.1 | 6.00E-47 | PR5-like receptor kinase |
| NR | XP_003624351.1 | 4.85E-112 | Receptor-like kinase [Medicago truncatula] |
| COG | YP_001192956.1 | 5.00E-11 | two component regulator [Flavobacterium johnsoniae UW101] |
| Swissprot | tr|P43298|TMK1_ARATH | 4.00E-52 | Probable receptor protein kinase TMK1 (Precursor) |
| trEMBL | tr|G7KUB9|G7KUB9_MEDTR | 2.00E-112 | Tyrosine kinase family protein {ECO:0000313|EMBL:AES80569.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03721 | 4404 | 7640 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | PPC:1.6.1 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003721s00043779.1 | PF13855.1 | LRR_8 | 40 | 98 | 9.00E-07 |
| Glyur003721s00043779.1 | PF13855.1 | LRR_8 | 191 | 232 | 6.00E-08 |
| Glyur003721s00043779.1 | PF07714.12 | Pkinase_Tyr | 285 | 381 | 4.20E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.090 |
| SRR1783600 | control | 0.051 |
| SRR1783602 | moderate drought stress | 0.067 |
| SRR1811619 | moderate drought stress | 0.066 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.075 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.002 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.223 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.310 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.034 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.125 |
| SRR2967015 | Control (Tissue:root) | 0.054 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.031 |
| SRR9715743 | Root | 0.036 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.010 |
| SRR8749030 | Uninduced | 0.022 |
| SRR8749031 | Uninduced | 0.038 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.001 |
| SRR8400027 | Control-Root | 0.066 |