Gene detail information of Glyur003727s00043670.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G26800.12.00E-162Aldolase superfamily protein
NRXP_003529496.10PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial-like [Glycine max]
COGYP_005032872.15.00E-126hydroxymethylglutaryl-CoA lyase [Azospirillum brasilense Sp245]
Swissprottr|O81027|HMGCL_ARATH0Hydroxymethylglutaryl-CoA lyase, mitochondrial
trEMBLtr|I1KML6|I1KML6_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G36340.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold03727230710454+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01640E4.1.3.4, HMGCL, hmgL EC:4.1.3.4 Butanoate metabolism map00650
Synthesis and degradation of ketone bodiesmap00072
Valine, leucine and isoleucine degradationmap00280
Geraniol degradationmap00281
Peroxisomemap04146


Gene Ontology

molecular_function

GO:0003824  catalytic activity



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur003727s00043670.1PF00682.14HMGL-like1423802.60E-44


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control6.141
SRR1783600control6.064
SRR1783602moderate drought stress8.138
SRR1811619moderate drought stress7.917

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain7.801
DRR006520Root Summer glycyrrhizin high producing strain7.817
DRR006521Root Winter glycyrrhizin high producing strain5.335
DRR006522Root Winter glycyrrhizin high producing strain5.439
DRR006523Root Summer glycyrrhizin low producing strain7.509
DRR006524Root Summer glycyrrhizin low producing strain7.437
DRR006525Leaf Summer glycyrrhizin high producing strain13.905
DRR006526Leaf Summer glycyrrhizin high producing strain13.851

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)13.289
SRR2868004Drought Stress(Tissue:root)14.440
SRR2967015Control (Tissue:root)15.286

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave32.404
SRR9715740Leave42.701
SRR9715741Leave39.481
SRR9715739Root10.426
SRR9715742Root9.791
SRR9715743Root9.440

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h11.161
SRR8749028MeJA induced 9h21.831
SRR8749029MeJA induced 9h9.930
SRR8749030Uninduced30.887
SRR8749031Uninduced27.893
SRR8749032Uninduced19.241

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root15.690
SRR8400027Control-Root12.561

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved