Gene detail information of Glyur003741s00039847.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G51840.10acyl-CoA oxidase 4
NRKHN10398.10Acyl-coenzyme A oxidase 4, peroxisomal [Glycine soja]
COGYP_002461466.16.00E-116acyl-CoA dehydrogenase domain-containing protein [Chloroflexus aggregans DSM 9485]
Swissprottr|Q96329|ACOX4_ARATH0Acyl-coenzyme A oxidase 4, peroxisomal
trEMBLtr|I1JLD2|I1JLD2_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G07540.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold03741973615160-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00232E1.3.3.6, ACOX1, ACOX3 EC:1.3.3.6 Fatty acid metabolism map01212
Fatty acid degradationmap00071
alpha-Linolenic acid metabolismmap00592
Biosynthesis of unsaturated fatty acidsmap01040
cAMP signaling pathwaymap04024
Peroxisomemap04146
PPAR signaling pathwaymap03320


Gene Ontology

biological_process

GO:0008152  metabolic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0003995  acyl-CoA dehydrogenase activity

GO:0016627  oxidoreductase activity, acting on the CH-CH group of donors

GO:0050660  flavin adenine dinucleotide binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur003741s00039847.1PF02771.11Acyl-CoA_dh_N1121702.20E-10
Glyur003741s00039847.1PF02770.14Acyl-CoA_dh_M1762257.10E-18
Glyur003741s00039847.1PF00441.19Acyl-CoA_dh_12854255.80E-23


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control5.979
SRR1783600control6.229
SRR1783602moderate drought stress3.116
SRR1811619moderate drought stress3.139

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain10.361
DRR006520Root Summer glycyrrhizin high producing strain10.126
DRR006521Root Winter glycyrrhizin high producing strain11.666
DRR006522Root Winter glycyrrhizin high producing strain11.904
DRR006523Root Summer glycyrrhizin low producing strain8.753
DRR006524Root Summer glycyrrhizin low producing strain8.657
DRR006525Leaf Summer glycyrrhizin high producing strain5.195
DRR006526Leaf Summer glycyrrhizin high producing strain5.209

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)22.177
SRR2868004Drought Stress(Tissue:root)28.609
SRR2967015Control (Tissue:root)27.906

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave11.102
SRR9715740Leave10.115
SRR9715741Leave12.046
SRR9715739Root1.949
SRR9715742Root7.207
SRR9715743Root6.595

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h29.226
SRR8749028MeJA induced 9h25.589
SRR8749029MeJA induced 9h27.769
SRR8749030Uninduced32.820
SRR8749031Uninduced44.051
SRR8749032Uninduced43.809

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root24.897
SRR8400027Control-Root22.951

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved