Gene detail information of Glyur003747s00045272.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRATCG01080.12.00E-20NADH:ubiquinone/plastoquinone oxidoreductase, chain 6
NRXP_003621688.13.10E-75NAD(P)H-quinone oxidoreductase subunit 6 [Medicago truncatula]
COGYP_007131423.14.00E-11NAD(P)H-quinone oxidoreductase subunit 4L [Stanieria cyanosphaera PCC 7437]
Swissprottr|B5LMS3|NU6C_CICAR1.00E-44NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic
trEMBLtr|G7KTU2|G7KTU2_MEDTR1.00E-75NADH-ubiquinone/plastoquinone oxidoreductase chain 6 {ECO:0000313|EMBL:AES77906.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0374727893540+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K05578ndhG EC:1.6.5.3 Oxidative phosphorylation map00190


Gene Ontology

biological_process

GO:0042773  ATP synthesis coupled electron transport

GO:0055114  oxidation-reduction process


molecular_function

GO:0016651  oxidoreductase activity, acting on NAD(P)H


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur003747s00045272.1PF00420.19Oxidored_q2841273.70E-10


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control2.759
SRR1783600control3.003
SRR1783602moderate drought stress2.774
SRR1811619moderate drought stress2.417

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain1.108
DRR006520Root Summer glycyrrhizin high producing strain1.110
DRR006521Root Winter glycyrrhizin high producing strain0.522
DRR006522Root Winter glycyrrhizin high producing strain0.664
DRR006523Root Summer glycyrrhizin low producing strain1.625
DRR006524Root Summer glycyrrhizin low producing strain2.460
DRR006525Leaf Summer glycyrrhizin high producing strain10.321
DRR006526Leaf Summer glycyrrhizin high producing strain10.234

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.097
SRR2868004Drought Stress(Tissue:root)0.082
SRR2967015Control (Tissue:root)0.118

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave1.386
SRR9715740Leave1.478
SRR9715741Leave2.576
SRR9715739Root2.409
SRR9715742Root0.349
SRR9715743Root0.405

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.239
SRR8749028MeJA induced 9h0.182
SRR8749029MeJA induced 9h0.000
SRR8749030Uninduced0.210
SRR8749031Uninduced0.067
SRR8749032Uninduced0.062

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.050
SRR8400027Control-Root0.041

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved