Gene detail

Home
Network
Tools
- Search
- Blast
- Motif
- GSEA
- Heatmap Analysis
- JBrowse
Gene family
KEGG
Download
Help

Gene detail information of Glyur003763s00044802.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G46720.1	4.00E-81	3-ketoacyl-CoA synthase 13
NR	XP_004489712.1	5.52E-114	PREDICTED: 3-ketoacyl-CoA synthase 19-like isoform X1 [Cicer arietinum]
COG	YP_003158613.1	1.00E-09	3-oxoacyl-ACP synthase [Desulfomicrobium baculatum DSM 4028]
Swissprot	tr\|Q9ZUZ0\|KCS13_ARATH	1.00E-96	3-ketoacyl-CoA synthase 13 (Precursor)
trEMBL	tr\|M0SEU7\|M0SEU7_MUSAM	1.00E-121	3-ketoacyl-CoA synthase {ECO:0000256\|PIRNR:PIRNR036417}

Sequence

Transcript Sequence

>Glyur003763s00044802.1
ATGAAGCATTTCTATTGGACCTCTAATATAATGAACAATATTTTGTTCATGTCGTTCCTACTTGTAGCCGCAGCAGCTTGTGTTCATGAGTTCAATATTCCTCGACTACCCTTAATGACAAAAGCTTTTTGCTTAGCTGCTTCCATAGCATACTACTTATTCCTCATGAACCNACCCAACAAAGTTTACTTGGGACTGTTGGAGATCCCACCGAAGTTGACTCTTGACGAGGCGAGGAAGGAGTCGAGCACGGTGCTGTTCGGTGCCGTCGATGANCTGCTGGAGAAAACGGGCGTTGAGGTTAAGGACATTGGGATTCTTGTCGTGAATTGTTGCTTGTTCAATCCCACGCCGTCGCTTTCGGATATTATTGTGAATCACTACAAGCTTAGAGGGAATGTGTTGGTGTATAACCTCAGTGGCATGGGTTGTAGTGCTGGTGTTCTTGCTGTTGACTTTGCCAAACAGCTCCTACAGGTACACCGAAACACCTATGCTTTGGTGTTGAGNACAGAGAACCAAATCTCAAGCATTTATAAGGGCAACAACCCTTCCATGTTGCTTACCAATTGCCTCTTCCGCATGGGTGGATCTGCAGCCCTTCTCTCAAGTCATCCCTCCGACCGTTACATCTCAAAGTATCAACTCACCCACACCATCCGCACCCACGTCGGAGCCGACGAAAACAGCTACAACTGTGTCATCCAAGAGGAGGATGAAAATGGAAACGTCGGCGTACACATCACAACGTTGGGGCCACGTGTCCTCCCCGTCTCGGAGAAGCTCAAATCGACACTTTACCGATATGGGAACACATCATCAAGCTCTGTGTGGTATGAGCTATCGTATTGTGAGGCTAAGGGGAGAGTCAAAAAGGGTGATAGGGTTTGGCAAATGGCCTTTGGATCTGGATTCAAGTGTAACACTGCTGTGTGGGTTGCTCTGAAGAGTGTGGAGCCCAAATCGGTGAAGAATGTGTGGACGGACGAGATTGATGACTTTCCTATTAAGGTTGATCCAATA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold03763	391	5829	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K15397	KCS	EC:2.3.1.199	Fatty acid elongation	map00062

Gene Ontology

biological_process

GO:0006633 fatty acid biosynthetic process

GO:0008152 metabolic process

cellular_component GO:0016020 membrane molecular_function GO:0003824 catalytic activity GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups "

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003763s00044802.1	PF08392.7	FAE1_CUT1_RppA	66	263	3.60E-83

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.108
DRR006522	Root Winter glycyrrhizin high producing strain	0.039
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.082
SRR2868004	Drought Stress(Tissue:root)	0.073
SRR2967015	Control (Tissue:root)	0.242

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.000
SRR9715740	Leave	0.000
SRR9715741	Leave	0.000
SRR9715739	Root	0.222
SRR9715742	Root	2.140
SRR9715743	Root	1.761

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	1.934
SRR8400027	Control-Root	5.497