Gene detail information of Glyur003799s00036830.2 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G31500.1 | 2.00E-07 | DNAse I-like superfamily protein |
| NR | XP_006587654.1 | 2.01E-14 | PREDICTED: carbon catabolite repressor protein 4 homolog 4-like isoform X3 [Glycine max] |
| Swissprot | tr|A8MS41|CCR4D_ARATH | 2.00E-08 | Carbon catabolite repressor protein 4 homolog 4 |
| trEMBL | tr|I1L599|I1L599_SOYBN | 8.00E-15 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G35040.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03799 | 824 | 2248 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K12603 | CNOT6, CCR4 | EC:3.1.13.4 | RNA degradation | map03018 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.008 |
| SRR1783600 | control | 1.361 |
| SRR1783602 | moderate drought stress | 1.637 |
| SRR1811619 | moderate drought stress | 1.384 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.203 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.936 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.472 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.306 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.155 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.761 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.429 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.151 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 6.564 |
| SRR2868004 | Drought Stress(Tissue:root) | 5.817 |
| SRR2967015 | Control (Tissue:root) | 5.847 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.096 |
| SRR9715740 | Leave | 2.831 |
| SRR9715741 | Leave | 2.034 |
| SRR9715739 | Root | 1.970 |
| SRR9715742 | Root | 2.225 |
| SRR9715743 | Root | 2.765 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.818 |
| SRR8749028 | MeJA induced 9h | 2.762 |
| SRR8749029 | MeJA induced 9h | 3.231 |
| SRR8749030 | Uninduced | 1.818 |
| SRR8749031 | Uninduced | 1.728 |
| SRR8749032 | Uninduced | 1.780 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 4.404 |
| SRR8400027 | Control-Root | 4.065 |