Gene detail

Home
Network
Tools
- Search
- Blast
- Motif
- GSEA
- Heatmap Analysis
- JBrowse
Gene family
KEGG
Download
Help

Gene detail information of Glyur003816s00038230.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G26910.2	1.00E-128	Dihydrolipoamide succinyltransferase
NR	XP_004491412.1	0	PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial-like [Cicer arietinum]
COG	YP_759043.1	3.00E-93	2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [Hyphomonas neptunium ATCC 15444]
Swissprot	tr\|Q8H107\|ODO2B_ARATH	4.00E-171	Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial (Precursor)
trEMBL	tr\|I1JJB5\|I1JJB5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G46200.1}

Sequence

Transcript Sequence

>Glyur003816s00038230.1
ATGCTTCAGTTTCTAGCTCGGTCAGGGCAGAAAACCCGGTCTCGCCCATTTGCTCCTGCTAGAGTTTCTTCCTCTGTGGAAAAAGAGATTACATTTAATTCAGGAGGATGTGGAAATGTCCGAAATTTCTGTCAAATAACACCTGGGTGCTGGATTAATTCAAAACCTATAAGGGACGTTTTTCATCAAGAGGCTACCATGCAAACATGGAGGCGGTCATTTTCTTCGGAAAGTGGTGAGATATTAATTATTTTTAAGATATCAAATGTCATTTATATTTGTGATAAAGGAGATACGGTTGATGTTGTGGTCCCTCCACTGGCTGAATCTATCGAAGATGGAACTCTGGCAAAATTTCTGAAGAGGCCTGGTGACAGGGTTAATGTCGATGAACCAATTGCTCAAATTGAAACAGATAAGCTTCTAGCCAATGAAGGGGATACTGTTGAGCCTGGTAACAAGATAGCAATCATTTCAAGGTCTGCTGATGCTACAACCCATGTTGCACCATCTGAGACTACGTCTGAGAAAGCTGCTCCTAAGCCAACCCAAAAGGTTAGCAAGGCCGAGGATAAGAAAGCACCTAAAGTTGAAACTGCTCCTATTAAAGAGAAGCCCAAAACAACTGCTCCACAAAGCTCTCACACTGAGCCACAGCTTCCCCCTAAGGAAAGAGAAAGACGATCCTGGACTAATTTGATGAAGCTCCGTGCTGATTATAAGGATGCTTTTGTCGAAAAGCATGGAGTCAAATTGGGACTTATGTCTGGGTTTATCAAAGCTGCTGTCAATGCACTTCAACATCAACCTATTGTAAATGCAGTCATTGATGGGGATGATATTATATACAGAGATTACATAGATATCAGCATAGCTGTTGGTACTTCAAAGGGACTTGTTGTGCCAGTTATCCGCAATGCTGATACAATGAACTTTGCGGATATAGAGAAACAGATCAATGCTTTTGCAAAGAAGGCAAATGATGGAACTTTATCAATTGATGAGATGGCTGGAGGCACTCTTACAATATCAAATGGTGGCGTTTATGGGAGCCTTTTGAGTACCCCTATTATCAACCCCCCTCAGTCGGCAATCTTGGGTATGCATTCCATAGTGAGCCGTCCAATGGTTGTTGGAGGAAACGTTGTNCCAAGGCCAATGATGTACGTTGCTCTAACATATGACCATAGAATAATTGATGGAAGAGAGGCAGTGTTCTTCCTGCGACGCATCAAGGATATTGTGGAGGATCCTCGCAGGCTTCTGCTCGACCTATAAAGTGAAACCTCAAAAGTCATTGAAGTAAATGAAACCTCTTAAAATTCAAATACCATAATGGGTACCCTTTTGTTTGGCTCTTGAATTGCGGCGTTATTTACCATATTTATTGAGCAACCTCTTTAGGATCATCTCAATTTATCTGATATCGACTCAGCATGTTTGTGCTTTTCTTTCCTCTATCCCTCTCAAACAAGGGATCACAGTTTTTGGCTCATAAATTGTATGAAATGACTNCTAAGCATATTGTAGGGATTGCCCCTAAAGTAATAATGCGATTTAATTTCTTAGTACTATATGCTACAATATTTTTTCACTTAAACNAAAAACATCTCATAAATTGATACTCTGGATTTGATAGGAT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold03816	10296	16108	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00658	DLST, sucB	EC:2.3.1.61	Carbon metabolism	map01200
			Citrate cycle (TCA cycle)	map00020
			Lysine degradation	map00310

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function GO:0016746 transferase activity, transferring acyl groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003816s00038230.1	PF00364.17	Biotin_lipoyl	101	141	1.70E-06
Glyur003816s00038230.1	PF00198.18	2-oxoacid_dh	230	423	7.10E-68

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	105.720
SRR1783600	control	106.508
SRR1783602	moderate drought stress	82.490
SRR1811619	moderate drought stress	83.108

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	101.674
DRR006520	Root Summer glycyrrhizin high producing strain	98.424
DRR006521	Root Winter glycyrrhizin high producing strain	106.474
DRR006522	Root Winter glycyrrhizin high producing strain	103.004
DRR006523	Root Summer glycyrrhizin low producing strain	69.578
DRR006524	Root Summer glycyrrhizin low producing strain	67.813
DRR006525	Leaf Summer glycyrrhizin high producing strain	45.767
DRR006526	Leaf Summer glycyrrhizin high producing strain	45.216

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	211.096
SRR2868004	Drought Stress(Tissue:root)	157.365
SRR2967015	Control (Tissue:root)	136.122

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	78.659
SRR9715740	Leave	66.431
SRR9715741	Leave	89.843
SRR9715739	Root	68.865
SRR9715742	Root	114.914
SRR9715743	Root	107.366

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	111.357
SRR8749028	MeJA induced 9h	68.769
SRR8749029	MeJA induced 9h	92.739
SRR8749030	Uninduced	63.808
SRR8749031	Uninduced	52.416
SRR8749032	Uninduced	44.928

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	134.027
SRR8400027	Control-Root	125.882