Gene detail information of Glyur003817s00041938.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G20900.1 | 1.00E-25 | jasmonate-zim-domain protein 12 |
| NR | XP_004488159.1 | 4.97E-108 | PREDICTED: protein TIFY 3B-like [Cicer arietinum] |
| Swissprot | tr|Q9C5K8|TIF3B_ARATH | 5.00E-30 | Protein TIFY 3B |
| trEMBL | tr|A0A097GTY5|A0A097GTY5_PHALU | 8.00E-96 | Jasmonate ZIM domain-containing protein {ECO:0000313|EMBL:AIT38273.1} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03817 | 5333 | 8869 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | Tify |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003817s00041938.1 | PF06200.9 | tify | 110 | 142 | 7.30E-16 |
| Glyur003817s00041938.1 | PF09425.5 | CCT_2 | 200 | 225 | 1.80E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 107.205 |
| SRR1783600 | control | 108.687 |
| SRR1783602 | moderate drought stress | 93.553 |
| SRR1811619 | moderate drought stress | 93.403 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 81.599 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 80.631 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.374 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.962 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 48.950 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 49.303 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 46.668 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 46.405 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 133.249 |
| SRR2868004 | Drought Stress(Tissue:root) | 132.007 |
| SRR2967015 | Control (Tissue:root) | 137.229 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 107.954 |
| SRR9715740 | Leave | 109.924 |
| SRR9715741 | Leave | 82.445 |
| SRR9715739 | Root | 60.368 |
| SRR9715742 | Root | 59.007 |
| SRR9715743 | Root | 54.147 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 48.341 |
| SRR8749028 | MeJA induced 9h | 19.978 |
| SRR8749029 | MeJA induced 9h | 43.829 |
| SRR8749030 | Uninduced | 72.590 |
| SRR8749031 | Uninduced | 31.217 |
| SRR8749032 | Uninduced | 75.361 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 89.496 |
| SRR8400027 | Control-Root | 57.708 |