Gene detail information of Glyur003833s00037808.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G05710.10aconitase 3
NRXP_003596988.10Aconitate hydratase [Medicago truncatula]
COGYP_005443915.10aconitate hydratase [Caldilinea aerophila DSM 14535 = NBRC 104270]
Swissprottr|Q9SIB9|ACO2M_ARATH0Aconitate hydratase 2, mitochondrial (Precursor)
trEMBLtr|G7ITZ5|G7ITZ5_MEDTR0Cytoplasmic-like aconitate hydratase {ECO:0000313|EMBL:AES67239.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold03833943117333-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01681ACO, acnA EC:4.2.1.3 Carbon metabolism map01200
2-Oxocarboxylic acid metabolismmap01210
Biosynthesis of amino acidsmap01230
Citrate cycle (TCA cycle)map00020
Glyoxylate and dicarboxylate metabolismmap00630
Carbon fixation pathways in prokaryotesmap00720


Gene Ontology

biological_process

GO:0008152  metabolic process



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur003833s00037808.1PF00330.15Aconitase1496583.70E-148
Glyur003833s00037808.1PF00694.14Aconitase_C7879157.70E-45


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control103.142
SRR1783600control103.550
SRR1783602moderate drought stress79.135
SRR1811619moderate drought stress78.948

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain111.418
DRR006520Root Summer glycyrrhizin high producing strain110.410
DRR006521Root Winter glycyrrhizin high producing strain48.349
DRR006522Root Winter glycyrrhizin high producing strain46.867
DRR006523Root Summer glycyrrhizin low producing strain43.535
DRR006524Root Summer glycyrrhizin low producing strain42.965
DRR006525Leaf Summer glycyrrhizin high producing strain70.189
DRR006526Leaf Summer glycyrrhizin high producing strain69.700

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)189.482
SRR2868004Drought Stress(Tissue:root)164.455
SRR2967015Control (Tissue:root)143.997

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave86.729
SRR9715740Leave77.318
SRR9715741Leave109.321
SRR9715739Root71.211
SRR9715742Root179.376
SRR9715743Root158.740

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h46.187
SRR8749028MeJA induced 9h54.695
SRR8749029MeJA induced 9h67.753
SRR8749030Uninduced34.203
SRR8749031Uninduced16.390
SRR8749032Uninduced35.289

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root118.584
SRR8400027Control-Root115.029

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved