Gene detail information of Glyur003886s00043530.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G57750.1 | 1.00E-94 | cytochrome P450, family 96, subfamily A, polypeptide 15 |
| NR | KEH40805.1 | 0 | cytochrome P450 family protein [Medicago truncatula] |
| COG | YP_003385314.1 | 6.00E-17 | cytochrome P450 [Spirosoma linguale DSM 74] |
| Swissprot | tr|Q9FVS9|C96AF_ARATH | 3.00E-112 | Alkane hydroxylase MAH1 {ECO:0000303|PubMed:17905869} |
| trEMBL | tr|A0A072VRQ9|A0A072VRQ9_MEDTR | 0 | Cytochrome P450 family protein {ECO:0000313|EMBL:KEH40805.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03886 | 2194 | 4349 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Cytochrome P450 Family | CYP96A15 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003886s00043530.1 | PF00067.17 | p450 | 34 | 323 | 1.40E-14 |
| Glyur003886s00043530.1 | PF00067.17 | p450 | 322 | 445 | 5.80E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.000 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.000 |
| SRR2967015 | Control (Tissue:root) | 0.019 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.205 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.096 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.014 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.000 |
| SRR8400027 | Control-Root | 0.065 |