Gene detail information of Glyur003893s00036356.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G51840.12.00E-111acyl-CoA oxidase 4
NRXP_006576136.12.41E-148PREDICTED: acyl-CoA oxidase isoform X2 [Glycine max]
COGYP_002461466.12.00E-69acyl-CoA dehydrogenase domain-containing protein [Chloroflexus aggregans DSM 9485]
Swissprottr|Q96329|ACOX4_ARATH1.00E-137Acyl-coenzyme A oxidase 4, peroxisomal
trEMBLtr|I1JLD4|I1JLD4_SOYBN9.00E-149Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G07540.3}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold03893778611098+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00232E1.3.3.6, ACOX1, ACOX3 EC:1.3.3.6 Fatty acid metabolism map01212
Fatty acid degradationmap00071
alpha-Linolenic acid metabolismmap00592
Biosynthesis of unsaturated fatty acidsmap01040
cAMP signaling pathwaymap04024
Peroxisomemap04146
PPAR signaling pathwaymap03320


Gene Ontology

biological_process

GO:0008152  metabolic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0003995  acyl-CoA dehydrogenase activity

GO:0016627  oxidoreductase activity, acting on the CH-CH group of donors


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur003893s00036356.1PF02770.14Acyl-CoA_dh_M25661.00E-08
Glyur003893s00036356.1PF00441.19Acyl-CoA_dh_11262472.30E-09


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.986
SRR1783600control0.875
SRR1783602moderate drought stress0.468
SRR1811619moderate drought stress0.621

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain1.111
DRR006520Root Summer glycyrrhizin high producing strain1.376
DRR006521Root Winter glycyrrhizin high producing strain2.056
DRR006522Root Winter glycyrrhizin high producing strain1.993
DRR006523Root Summer glycyrrhizin low producing strain1.194
DRR006524Root Summer glycyrrhizin low producing strain1.714
DRR006525Leaf Summer glycyrrhizin high producing strain0.751
DRR006526Leaf Summer glycyrrhizin high producing strain0.890

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.083
SRR2868004Drought Stress(Tissue:root)1.948
SRR2967015Control (Tissue:root)1.841

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.000
SRR9715740Leave0.316
SRR9715741Leave0.033
SRR9715739Root0.000
SRR9715742Root0.000
SRR9715743Root0.000

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.557
SRR8749028MeJA induced 9h0.755
SRR8749029MeJA induced 9h0.735
SRR8749030Uninduced1.412
SRR8749031Uninduced0.234
SRR8749032Uninduced5.393

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.006
SRR8400027Control-Root0.210

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved