Gene detail information of Glyur003893s00036357.4


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G02850.52.00E-63beta glucosidase 11
NRKEH28905.12.78E-129glycoside hydrolase family 1 protein [Medicago truncatula]
COGYP_004449345.12.00E-37beta-galactosidase [Haliscomenobacter hydrossis DSM 1100]
Swissprottr|B3H5Q1|BGL11_ARATH9.00E-71Beta-glucosidase 11 (Precursor)
trEMBLtr|A0A072USR4|A0A072USR4_MEDTR1.00E-129Glycoside hydrolase family 1 protein {ECO:0000313|EMBL:KEH28905.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold038931259818782-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH1


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01188E3.2.1.21 EC:3.2.1.21 Starch and sucrose metabolism map00500
Cyanoamino acid metabolismmap00460
Phenylpropanoid biosynthesismap00940


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process


molecular_function

GO:0004553  hydrolase activity, hydrolyzing O-glycosyl compounds


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur003893s00036357.4PF00232.13Glyco_hydro_1531231.50E-19
Glyur003893s00036357.4PF00232.13Glyco_hydro_11281872.90E-20


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control14.132
SRR1783600control14.178
SRR1783602moderate drought stress14.512
SRR1811619moderate drought stress14.748

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain6.555
DRR006520Root Summer glycyrrhizin high producing strain6.855
DRR006521Root Winter glycyrrhizin high producing strain6.171
DRR006522Root Winter glycyrrhizin high producing strain5.638
DRR006523Root Summer glycyrrhizin low producing strain0.803
DRR006524Root Summer glycyrrhizin low producing strain0.991
DRR006525Leaf Summer glycyrrhizin high producing strain100.804
DRR006526Leaf Summer glycyrrhizin high producing strain97.287

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)80.661
SRR2868004Drought Stress(Tissue:root)67.600
SRR2967015Control (Tissue:root)51.866

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave73.066
SRR9715740Leave111.261
SRR9715741Leave87.280
SRR9715739Root9.359
SRR9715742Root14.732
SRR9715743Root13.188

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h46.583
SRR8749028MeJA induced 9h69.984
SRR8749029MeJA induced 9h67.424
SRR8749030Uninduced5.568
SRR8749031Uninduced6.660
SRR8749032Uninduced9.526

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root85.306
SRR8400027Control-Root63.041

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved