Gene detail information of Glyur003894s00041772.2 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G24330.1 | 0 | ARM repeat superfamily protein |
| NR | KHN24080.1 | 0 | U-box domain-containing protein 6 [Glycine soja] |
| COG | YP_001957949.1 | 7.00E-13 | hypothetical protein Aasi_0849 [Candidatus Amoebophilus asiaticus 5a2] |
| Swissprot | tr|O48700|PUB6_ARATH | 0 | U-box domain-containing protein 6 |
| trEMBL | tr|K7MPA0|K7MPA0_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G01180.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03894 | 9320 | 15090 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | U_box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003894s00041772.2 | PF04564.10 | U-box | 292 | 361 | 4.60E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.681 |
| SRR1783600 | control | 8.742 |
| SRR1783602 | moderate drought stress | 5.802 |
| SRR1811619 | moderate drought stress | 5.694 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.957 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.986 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.561 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.306 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.349 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.187 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.629 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.618 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 14.564 |
| SRR2868004 | Drought Stress(Tissue:root) | 12.619 |
| SRR2967015 | Control (Tissue:root) | 12.578 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 12.897 |
| SRR9715740 | Leave | 11.958 |
| SRR9715741 | Leave | 11.170 |
| SRR9715739 | Root | 8.329 |
| SRR9715742 | Root | 5.993 |
| SRR9715743 | Root | 6.845 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 27.946 |
| SRR8749028 | MeJA induced 9h | 41.112 |
| SRR8749029 | MeJA induced 9h | 31.391 |
| SRR8749030 | Uninduced | 19.520 |
| SRR8749031 | Uninduced | 18.343 |
| SRR8749032 | Uninduced | 18.266 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 14.993 |
| SRR8400027 | Control-Root | 14.593 |