Gene detail information of Glyur003905s00039848.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G30650.1 | 6.00E-11 | ATP-dependent caseinolytic (Clp) protease/crotonase family protein |
| NR | XP_007152492.1 | 2.96E-20 | hypothetical protein PHAVU_004G1352001g, partial [Phaseolus vulgaris] |
| COG | YP_577799.1 | 5.00E-08 | 3-hydroxyisobutyryl-CoA hydrolase [Nitrobacter hamburgensis X14] |
| Swissprot | tr|Q1PEY5|HIBC2_ARATH | 1.00E-12 | Probable 3-hydroxyisobutyryl-CoA hydrolase 2 |
| trEMBL | tr|V7C6D9|V7C6D9_PHAVU | 1.00E-20 | Uncharacterized protein {ECO:0000313|EMBL:ESW24486.1} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03905 | 615 | 1831 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K05605 | HIBCH | EC:3.1.2.4 | Carbon metabolism | map01200 |
| Propanoate metabolism | map00640 | |||
| Valine, leucine and isoleucine degradation | map00280 | |||
| beta-Alanine metabolism | map00410 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003905s00039848.1 | PF13766.1 | ECH_C | 19 | 52 | 6.90E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.143 |
| SRR1783600 | control | 0.144 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.039 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.095 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.000 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.000 |
| SRR2967015 | Control (Tissue:root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 4.534 |
| SRR9715740 | Leave | 0.281 |
| SRR9715741 | Leave | 1.381 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.107 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.000 |
| SRR8400027 | Control-Root | 0.059 |