Gene detail information of Glyur003909s00043089.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G60360.11.00E-56RING/U-box superfamily protein
NRXP_003601068.13.30E-138RING finger protein [Medicago truncatula]
Swissprottr|P0CH30|RING1_GOSHI6.00E-42E3 ubiquitin-protein ligase RING1
trEMBLtr|G7J326|G7J326_MEDTR1.00E-138Zinc finger, C3HC4 type (RING finger) protein {ECO:0000313|EMBL:AES71319.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0390956166611-


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur003909s00043089.1PF14369.1zf-RING_324591.10E-11
Glyur003909s00043089.1PF13639.1zf-RING_22182602.30E-14


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.709
SRR1783600control0.627
SRR1783602moderate drought stress0.769
SRR1811619moderate drought stress0.664

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain1.253
DRR006520Root Summer glycyrrhizin high producing strain1.354
DRR006521Root Winter glycyrrhizin high producing strain0.000
DRR006522Root Winter glycyrrhizin high producing strain0.000
DRR006523Root Summer glycyrrhizin low producing strain1.714
DRR006524Root Summer glycyrrhizin low producing strain1.552
DRR006525Leaf Summer glycyrrhizin high producing strain0.373
DRR006526Leaf Summer glycyrrhizin high producing strain0.331

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)2.361
SRR2868004Drought Stress(Tissue:root)3.086
SRR2967015Control (Tissue:root)2.724

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.620
SRR9715740Leave0.121
SRR9715741Leave0.210
SRR9715739Root0.339
SRR9715742Root2.252
SRR9715743Root1.465

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.321
SRR8749028MeJA induced 9h0.982
SRR8749029MeJA induced 9h0.650
SRR8749030Uninduced0.212
SRR8749031Uninduced0.647
SRR8749032Uninduced1.365

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.677
SRR8400027Control-Root0.724

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved