Gene detail

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Gene detail information of Glyur003946s00040538.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G71697.1	8.00E-110	choline kinase 1
NR	NP_001236799.1	0	GmCK1p [Glycine max]
COG	YP_002527202.1	1.00E-11	choline/ethanolamine kinase [Rhodobacter sphaeroides KD131]
Swissprot	tr\|Q9M9H6\|CK1_ARATH	1.00E-135	Probable choline kinase 1
trEMBL	tr\|Q42809\|Q42809_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G08600.3}

Sequence

Transcript Sequence

>Glyur003946s00040538.1
TGATTTCATTTTGCCACAATTTGCCCGGTTTCTCAGCTCTCTGGACTTCTCTGCTTATTCTGGGACAAAACTTGAATTGGGAAAGGATGGCCATAAAGACACTTGAATTGTTGAAAGGCTACGAAACCCATGAAGAGATAATGGAAGTTCTTGCAGGAGTGGCATTGGATTTAGGGGATGCAATTGAGGATGTGAGTTTAGTGCAGGTGAAACCATTGAAGGGGGCAATGACCAATGAGGTTTTTGAAGTCAACTGGCCAACCAAAAGTAGTGATAATGGTTGTAACCTTAGGAGAAGGGTTCTGGTTCGGTTATATGGAGAAGGTGTCGAGGTTTTCTTCAACAGAAGTGATGAGATCCAAACCTTTGAGTGCATGTCAAGGCACGGCCACGGTCCACGCCTTCTTGGCCGGTTCGCCACCGGTCGAGTTGAGGAGTTCATCCATGCCAAAACACTCTCAGCTGCTGACCTCCGCGACCCGGAAATATCTTCTTTGATTGCATCTAAGATGAGGGAGAACTGGCTTAATCATGCCAAAAGTTTGTGCTCCCCAAAGGATATCAAGAACTTTGGCCTGGAAAATCTAGATGCTGAGATAAATATGTTGGGAGAGTTGTTATCAGAAGGATGTCAAGATATTGGTTTTTGTCACAATGACCTACAATATGGTAACATAATGATAGATGAAGAAACAAGACAAATCACTTTAATTGACTATGAATATGCCAGTTACAATCCTGTTGCATATGACCTGGCAAATCATTTCTGCGAAATGGCAGCAAATTACCATAGTGACACACCTCATGTTCTTGACTACAATAAATATCCTGGCAAGAAGCCAAGCAATGCTGAAGTGGAGCAGTTAGTGAATGTTGTAGAAAAGTACACTCTTGCAAACCATCTATTTTGGGGCTTGTGGGGACTTATTTCGAATTATGTCAATACAATTGACTTTGACTACAAGGAGTATGCAAGGCAAAGGTTTCAACAATACTGGTCAAAGAAGCCTTCTTTATTGAACTCACCAAGCATCATTTCCCAAGATGGAATAATTGTCAAGGGTTCACTGGCACCCTTGACATGATTAATTGCTTCTTAATTATGTGTGATATGCAGAACAAAATTATGTAAATAATAAAATGTGTGATGTCTTAGTAATCCCTCACCTGTGATTGAGTTGAGGAATAGAATGGAGAATTCCTAGTTATTGTCATATATCATTTGCTAGAGCTGGGCCTGGCTTGCTAAT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold03946	9297	15648	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K14156	CHK	EC:2.7.1.32 2.7.1.82	Glycerophospholipid metabolism	map00564
K14156	CHK	EC:2.7.1.32 2.7.1.82	Choline metabolism in cancer	map05231

Gene Ontology

biological_process
GO:0046474 glycerophospholipid biosynthetic process

molecular_function GO:0016301 kinase activity GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003946s00040538.1	PF01633.15	Choline_kinase	70	144	1.50E-22
Glyur003946s00040538.1	PF01633.15	Choline_kinase	148	250	6.50E-35

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.155
SRR1783600	control	2.196
SRR1783602	moderate drought stress	1.332
SRR1811619	moderate drought stress	1.349

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.373
DRR006520	Root Summer glycyrrhizin high producing strain	1.396
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	1.499
DRR006524	Root Summer glycyrrhizin low producing strain	1.574
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.967
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.065

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	29.773
SRR2868004	Drought Stress(Tissue:root)	29.435
SRR2967015	Control (Tissue:root)	25.180

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	21.916
SRR9715740	Leave	13.121
SRR9715741	Leave	23.079
SRR9715739	Root	0.753
SRR9715742	Root	3.516
SRR9715743	Root	2.572

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.180
SRR8749028	MeJA induced 9h	3.168
SRR8749029	MeJA induced 9h	0.696
SRR8749030	Uninduced	4.704
SRR8749031	Uninduced	1.376
SRR8749032	Uninduced	0.614

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	16.469
SRR8400027	Control-Root	11.629