Gene detail information of Glyur003959s00041120.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G49880.10glycosyl hydrolase family protein 43
NRXP_006573666.10PREDICTED: uncharacterized protein LOC100775557 [Glycine max]
COGNP_812596.11.00E-114hypothetical protein BT_3685 [Bacteroides thetaiotaomicron VPI-5482]
trEMBLtr|I1J9E8|I1J9E8_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G40190.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold03959991713800+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH43


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process


molecular_function

GO:0004553  hydrolase activity, hydrolyzing O-glycosyl compounds


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur003959s00041120.1PF04616.9Glyco_hydro_432113956.50E-20


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control11.617
SRR1783600control11.644
SRR1783602moderate drought stress13.493
SRR1811619moderate drought stress13.400

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain15.528
DRR006520Root Summer glycyrrhizin high producing strain15.230
DRR006521Root Winter glycyrrhizin high producing strain18.461
DRR006522Root Winter glycyrrhizin high producing strain18.310
DRR006523Root Summer glycyrrhizin low producing strain18.165
DRR006524Root Summer glycyrrhizin low producing strain18.421
DRR006525Leaf Summer glycyrrhizin high producing strain7.020
DRR006526Leaf Summer glycyrrhizin high producing strain6.738

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)21.033
SRR2868004Drought Stress(Tissue:root)22.186
SRR2967015Control (Tissue:root)22.206

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave11.609
SRR9715740Leave11.133
SRR9715741Leave10.048
SRR9715739Root5.071
SRR9715742Root13.465
SRR9715743Root10.984

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h9.059
SRR8749028MeJA induced 9h15.245
SRR8749029MeJA induced 9h6.191
SRR8749030Uninduced3.612
SRR8749031Uninduced2.121
SRR8749032Uninduced1.724

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root15.841
SRR8400027Control-Root17.238

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved