Gene detail information of Glyur003959s00041121.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G37650.13.00E-146GRAS family transcription factor
NRXP_003538789.10PREDICTED: protein SHORT-ROOT-like [Glycine max]
Swissprottr|Q9SZF7|SHR_ARATH0Protein SHORT-ROOT
trEMBLtr|I1LH59|I1LH59_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G05110.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold039591755218949-


Gene family

Gene familysubfamily
Transcription Factors FamilyGRAS


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0008356  asymmetric cell division

GO:0009956  radial pattern formation

GO:0048366  leaf development


cellular_component

GO:0005634  nucleus


molecular_function

GO:0003700  transcription factor activity, sequence-specific DNA binding

GO:0043565  sequence-specific DNA binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur003959s00041121.1PF03514.9GRAS911611.20E-12
Glyur003959s00041121.1PF03514.9GRAS1714401.70E-74


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control2.285
SRR1783600control2.545
SRR1783602moderate drought stress1.063
SRR1811619moderate drought stress1.135

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain7.937
DRR006520Root Summer glycyrrhizin high producing strain7.855
DRR006521Root Winter glycyrrhizin high producing strain0.053
DRR006522Root Winter glycyrrhizin high producing strain0.123
DRR006523Root Summer glycyrrhizin low producing strain5.570
DRR006524Root Summer glycyrrhizin low producing strain6.287
DRR006525Leaf Summer glycyrrhizin high producing strain6.905
DRR006526Leaf Summer glycyrrhizin high producing strain6.706

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)21.493
SRR2868004Drought Stress(Tissue:root)30.287
SRR2967015Control (Tissue:root)24.752

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave8.246
SRR9715740Leave7.098
SRR9715741Leave7.875
SRR9715739Root7.123
SRR9715742Root15.026
SRR9715743Root11.884

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.268
SRR8749028MeJA induced 9h0.080
SRR8749029MeJA induced 9h0.443
SRR8749030Uninduced0.314
SRR8749031Uninduced0.056
SRR8749032Uninduced0.560

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root4.511
SRR8400027Control-Root3.272