Gene detail information of Glyur003971s00040586.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G32990.1 | 0 | glycosyl hydrolase 9B8 |
| NR | XP_003616918.1 | 0 | Endoglucanase [Medicago truncatula] |
| COG | YP_007159459.1 | 4.00E-93 | Cellulase [Anabaena cylindrica PCC 7122] |
| Swissprot | tr|O48766|GUN11_ARATH | 0 | Endoglucanase 11 (Precursor) |
| trEMBL | tr|G7K7J2|G7K7J2_MEDTR | 0 | Glycosyl hydrolase family 9 protein {ECO:0000313|EMBL:AES99876.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03971 | 3094 | 7940 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH9 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003971s00040586.1 | PF00759.14 | Glyco_hydro_9 | 49 | 507 | 4.70E-156 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.395 |
| SRR1783600 | control | 0.460 |
| SRR1783602 | moderate drought stress | 0.495 |
| SRR1811619 | moderate drought stress | 0.513 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.327 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.482 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.613 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.545 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.420 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.246 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.288 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.503 |
| SRR2967015 | Control (Tissue:root) | 0.340 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.087 |
| SRR9715740 | Leave | 0.020 |
| SRR9715741 | Leave | 0.204 |
| SRR9715739 | Root | 0.274 |
| SRR9715742 | Root | 0.704 |
| SRR9715743 | Root | 0.561 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.051 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.267 |
| SRR8400027 | Control-Root | 1.756 |