Gene detail information of Glyur004008s00037413.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G50950.20FUMARASE 2
NRXP_007145184.10hypothetical protein PHAVU_007G217600g [Phaseolus vulgaris]
COGNP_968219.10fumarate hydratase [Bdellovibrio bacteriovorus HD100]
Swissprottr|P93033|FUM1_ARATH0Fumarate hydratase 1, mitochondrial (Precursor)
trEMBLtr|V7BJH7|V7BJH7_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW17178.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold040081245218348-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01679E4.2.1.2B, fumC EC:4.2.1.2 Carbon metabolism map01200
Citrate cycle (TCA cycle)map00020
Pyruvate metabolismmap00620
Carbon fixation pathways in prokaryotesmap00720
Pathways in cancermap05200
Renal cell carcinomamap05211


Gene Ontology

biological_process

GO:0006099  tricarboxylic acid cycle

GO:0006106  fumarate metabolic process


cellular_component

GO:0045239  tricarboxylic acid cycle enzyme complex


molecular_function

GO:0003824  catalytic activity

GO:0004333  fumarate hydratase activity

GO:0016829  lyase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur004008s00037413.1PF00206.15Lyase_1403701.00E-114
Glyur004008s00037413.1PF10415.4FumaraseC_C4364908.10E-24


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control22.787
SRR1783600control22.765
SRR1783602moderate drought stress18.248
SRR1811619moderate drought stress17.826

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain21.950
DRR006520Root Summer glycyrrhizin high producing strain21.486
DRR006521Root Winter glycyrrhizin high producing strain12.834
DRR006522Root Winter glycyrrhizin high producing strain12.627
DRR006523Root Summer glycyrrhizin low producing strain17.280
DRR006524Root Summer glycyrrhizin low producing strain17.628
DRR006525Leaf Summer glycyrrhizin high producing strain24.135
DRR006526Leaf Summer glycyrrhizin high producing strain23.848

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)52.699
SRR2868004Drought Stress(Tissue:root)38.403
SRR2967015Control (Tissue:root)26.228

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave23.364
SRR9715740Leave19.693
SRR9715741Leave30.611
SRR9715739Root9.295
SRR9715742Root19.100
SRR9715743Root18.934

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h16.484
SRR8749028MeJA induced 9h17.688
SRR8749029MeJA induced 9h17.346
SRR8749030Uninduced12.336
SRR8749031Uninduced17.055
SRR8749032Uninduced8.434

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root24.221
SRR8400027Control-Root22.242

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved