Gene detail

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Gene detail information of Glyur004029s00044502.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G40380.1	3.00E-133	cysteine-rich RLK (RECEPTOR-like protein kinase) 42
NR	XP_003555067.1	0	PREDICTED: cysteine-rich receptor-like protein kinase 42-like [Glycine max]
COG	YP_001958461.1	8.00E-16	hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|Q9FNE1\|CRK42_ARATH	0	Cysteine-rich receptor-like protein kinase 42 (Precursor)
trEMBL	tr\|I1N753\|I1N753_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G13770.1}

Sequence

Transcript Sequence

>Glyur004029s00044502.1
ATGAGCTCCACAAAGGGCTTCTTGTCAACTGCAAGACACAATAAGAAGAACAACTCATCACGATCAAGAGTTATCTTCTTCGCCTTGGTTTTCCTCCTGTGGTCATCATGCTTAGTACTCTCCGACCCAAGAATCACGGAAGCGGGGCTGTACTGTGGGAGAGCGAAGGCTCCACTGAGATCTAACTACATCCCAAGTTTCATCAAAGAAATGGANACCCTCTCCCAGCTGCTTCTGGTGACAGACAACAAGTACTACTGGGCCACTCACGCCGTGAACGTGAACATCGTGAAAAACAATTCCAATAATAATAATAATAATATCCCAATCTATGGCTTTGCGCAGTGNTTCCGTGACCTCTCCCACACCGATTGCCTCCTCTGCTACGCCGCAAGCCGCACAAGGCTCCCTCGCTGCCTCCCTTCCCTCTCTGCCCGCATCTACCTCGATGGCTGCTTCCTCCGCTACGACAACTACAGCTTCTACTCGGAGGTCACTGACCCTCTCAGGGACACCGTCAACTGCACCGCCGGAGATGTCGGAGCCGAAGCCGAGAGTGTTGGTAGAGTGGTTGATGCTGTGGCCCTCAAGGCAGGTGGAGGTGGTGGTGGGTTTGCTGTGGGACAAGTTGGGNAAGTTTATGCTTTGGCACAGTGCTGGAACACTGTTGGAACTGATGGTTGCAGAGAGTGCCTTAGGAAAGCTGCCAAAGAGGTTAGAGGCTGTTTGCCTAAGAAGGAAGGTAGGGCCTTGAATGCTGGCTGTTATTTGAGATATTCAACACACAAGTTCTACAATGAAGAACAAGGTGCTGCAGCAGCAGATGGTACTGGAAGTGGATCTTTAAGAAGAGGAGCTATAATAGCAGCAGTGTTGGCTATAGCTGCAATTATAATGCTCGCTCTCTNTGCCTCTTATGCAGCCTTCACAAAATTGTCAAGGATTAGTAAAGAAAACAAGAATCTTGGTCATATTTCCTCTTCCATTAGCAAATCAAATTTGAACTACAAGTACGAAACTCTTGAGAAGGCCACAGATTATTTCAACTCTTCAAGGAAAATAGGCCAAGGGGGAGCTGGTTCGGTTTTCAAAGGCATTCTTCCCAACGGAACTGTTGTTGCAGTGAAGAGATTGGTCTTCAATAACANGCAATGGGTGGATGAGTTCTTCAATGAAGTAAATTTGATTAGTGGAATCGAACACAAGAACCTTGTCAAACTATTGGGTTGTAGCATTGAAGGCCCTGAGAGCCTCCTTGTGTATGAGTACTTATCCAATAAGAGTTTAGATCAGTTCCTCTTTGAAAAAAACAGAACTCAGATTCTAATATGGAAGCAGCGGTTTAATATCATTCTTGGTACAGCAGAAGGGCTTGCTTATCTTCATGAAGGTTCTGAAATAAGAATCATCCATAGAGATATCAAAAGCAGCAATGTTCTCCTGGACGAGAATCTCACTCCTAAGATTGCAGATTTCGGCCTCGCCCGCTGTTTCGCTGCTGATAAAACACATTTGAGTACTGGAATTGCTGGAACACTATGTTCCTATACCAAGTCAACCTCCGTTTCTAAACATGGAGTGCTAGACTTAGGCAGCTCCGTTAGGTCTAATTATAGCACAAACAACTTTGTGTCCAATGCCTTAAAGAAGATTGGGGTGTCCTACAGCTACTCAGAGTCCACTAGTTCACGCAACTCGGATCATGAGCCATGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold04029	6798	11117	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.7.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur004029s00044502.1	PF01657.12	Stress-antifung	103	161	2.30E-09
Glyur004029s00044502.1	PF01657.12	Stress-antifung	189	264	2.90E-12
Glyur004029s00044502.1	PF00069.20	Pkinase	350	512	7.20E-32

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.008
SRR1783600	control	0.021
SRR1783602	moderate drought stress	1.483
SRR1811619	moderate drought stress	1.521

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.203
DRR006520	Root Summer glycyrrhizin high producing strain	0.253
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.064
DRR006524	Root Summer glycyrrhizin low producing strain	0.019
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.198
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.876

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	2.205
SRR2868004	Drought Stress(Tissue:root)	3.561
SRR2967015	Control (Tissue:root)	3.550

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	1.371
SRR9715740	Leave	2.608
SRR9715741	Leave	2.702
SRR9715739	Root	0.100
SRR9715742	Root	0.154
SRR9715743	Root	0.250

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.060
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	3.636
SRR8400027	Control-Root	4.852