Gene detail

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Gene detail information of Glyur004032s00041445.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G47570.1	0	Leucine-rich repeat protein kinase family protein
NR	CAN83822.1	0	hypothetical protein VITISV_030954 [Vitis vinifera]
COG	YP_004775215.1	6.00E-51	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|C0LGP4\|Y3475_ARATH	0	Probable LRR receptor-like serine/threonine-protein kinase At3g47570 (Precursor)
trEMBL	tr\|A5C1G0\|A5C1G0_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN83822.1}

Sequence

Transcript Sequence

>Glyur004032s00041445.1
ATGTGGTGTGGCCAAAACAGAACTGTGGCCCTGGCATTAGGAAACCATACTGATCATTTGGCATTGCTCAAATTCAAGGAATCAATACCCACAGACCCTTATGGAGTTCTAGATTCTTGGAATAGTTCTACCCACTTCTGCAACTGGGATGGAATCACATGCAGCCACATACACCTAAGAGTTACAGAGTTGAACTTATCAGGATATCATTTGCATGGACCCTTGTCTCCCCATGTTGGAAATCTCTCTTTTATGAGAAACCTCTATCTTGCAGACAACAACTTCTTTGGAAAAATCCCACAGGAACTGGGCCGGTTGTTACGATTGCGTCAACTCCATTTGTCCAATAATTCATTTGAAGGGGAGATTCCGACAAACCTGACAAATTGCTCCAATCTTAGAGTCTTATCCTTGAATGGGAACAGTCTGACTGGCAAAATACCAGTTCAAATCGGCTCTCTTCAAAAGCTTGAAGTATTTCGCATTGGGAGAAACAATTTAACCGGAGGAGTATCACCATTCATAGGGAATCTTTCATCCTTAACAGTTCTTAATGTTGCTTATAACAACTTACAGGGAGATATACCACAAGAATTATGTCTTCTCAAAAACTTAACAATGATAGTCGTTGGTGTCAACAAACTATCTGGTACATTTCCTTCTTGTCTCTACAATGTGTCATCTCTTACCGTGATCTCAATTTCAGAGAATCACTTTGATGGCTCTCTTCCACCCAACATGTTCCACACCCTCCCCAATCTCAAATATTTTGAGATTGGTGGGAATCAAATCTCAGGTCCAATCCCCACTTCCGTTGCAAATGCTTCAACCATTGTAAAGCTTGATATATCTCAAAACCATTTCAACGGACAAGTCCCAAGTCTAGGGAAGCTACAACATATTCAGTGGCTAAATATTGGAAAGAACAATCTAGGTGCCAATTCACCTAAGGATTTGGAGATGTTAACATCATTGAGAAACTGTAGTAAGTTATATGTGCTCTCCATGTCTTACAATAATTTTGGAGGCCATTTACCAAACTCAGTGGGAAATTTGTCCACCCAACTCAGTCAACTTTATCTTGGGGGTAATCATATATATGGGCAAATTCCTATTGAATTAGGAAATCTAATTAGCTTAATTCTTTTGGCCATGGAAAATAATCGTTTGGAAGGGATGATTCCAACAACTTTTGCGAAGCTTCAGAAAATCCAAAGGTTAAATTTGGGAGGAAACAAGCTATCAGGAGAAATACCACCCTCCGTAGGCAACCTCAGTCAATTGTATTATTTGCATATAGCAGGCAATATGTTGGAAGGAAGTATTCCTCCGAGTATAGGGAACTGCCAAAAGTTACAATATCTGAACCTTTTACAAAACAACCTTGAAGGAGACATACCCTTAGAGATTTTTAGCCTTTCATCTTTAACAAAAGGGCTGGACTTATCAAAAAATTCACTGAGTGGTATTCTACCTAAAGAAGTGGGTCAGTTACAAAATATTGTGCAGTTTGATGTCTCTGAAAATCGTCTGTCTGGTGAGATTCCTGGAACCATTGGAGAATGCATAAGCTTGGAGTCTCTTTATTTGCAAGGGAATCTCTTCCGTGGAACCGTACCGTCTACTTTGGCTTCGCTCAAAGCCCTTCAACATTTAGACCTATCACGAGACAACTTATCAGGATCAATTCCTAAAGGTCTACAAAATATTTCTTCCTTGCAATACTTCAATGTATCTTTTAACATGTTGGACGGCGAGGTGCCAACTGAAGGCGTCTTTGGAAATGCAAGTGGGTTGGCAGTAACAGGAAACAATAACCTTTGTGGGGGTATTTTAGAGTTGCATCTACCGCCATGCCCTGCCAAAGGTATGAAACCAGCAAAACACCATAATTTCAGGTTGATAGCGGTGATAGTTACTGTGGTTGCTTTTCTTCTCATGCTGCTATTTATTCTAACTATCTTCTGGATGAGGAAAAGAAACAAGAAGCCATCTTCTAATAATTCACCAACTATTGATCAACTGGCTAAGGTTTCATATCAAAACCTCCACAACGGAACCGATGGGTTCTCAACTAGAAATTTGATGGGTTTTGGAAATTTCGGCTCTGTCTACAAAGGAACTCTTGACTCAGAAGATAGAGTTGTTGCCATAAAGGTCCTAAACCTTCAAAAGAAGGGAGCTCACAAGAGTTTCGTTGCCGAATGCAATGCACTAAAAAATATTAGACATCGAAATCTTGTTAAGATTTTAACATGTTGTTCTAGTACAGATTACAATGGTCAAGAATTCAAAGCTCTAGTTTTCGAGTACATGGAGAATGGCAGCTTAGAAGAATGGCTGCATCCAAGGATAGGAAGTGTGGAGGAGCTTCCTAAAACATTGAATCTTGATCAAAGGTTAAATATCATTATCGATGTTGCTTCTGCATTACACTATCTACATCATGAATGTGACCAATTGGTCCTTCATTGTGATCTGAAGCCAAGCAATGTCCTTCTTGATGATGACATGGTTGCTCATGTGAGTGATTTTGGCANAGCAAGACTTGTCTCAACCATCGACGGTACCTCTCATAAGGAAACTAGCGGTAGTACAATTGGAATAAAAGGGACTATTGGCTATGCTCCTCCAGAGTATGGACTGGGTTCTCAAGTGTCCACATATGGTGACATGTATAGCTTCGGGATGCTTATTTTGGAAATGCTTACTGGAAGAAGACCCACTGATGAAATGTTTGAAGATGGTCAAAATTTGCATAACTTTGTTAAAATTTCATTTCTTGATAATCTTGTACATGTTTTAGACCCACATCTTGTACCAAGAGATGAAGAAGCAGCAACAGAAGATGGAATCAGTGGGAATCTTATTCCAACTGTAGAGAAGTGCTTCGTTTCCCTTTTTAGGATTGGACTTGCTTGTTCAATGGAATCACCGAAAGAAAGAATGAATATAGTGGATGTCACAAGAGAGCTAAACATAATCAAAAAGGCGTTTCTCACAGACTACAACGTACAAAGCCAAAAAACAATTGCCACCACATTAGGAAACCATACTGATCATTTGGCATTGCTCAAATTCAAGGAATCAATTCCCACAGACCCTTATGGAGTTCTAGATTCTTGGAATAGTTCTACCCACTTCTGCAACTGGCACGGAATCAAATGCAGCCACATGCACCAAAGAGTTACAGAGTTGAACTTATCAAGATATCATTTGCATGGATCTTTGTCTCCCCATGTTGGCAATCTCTCTTTTATGAGAAACCTCTATCTTTCAGACAATAGCTTCTTTGGAAAAATCCCACAGGAGCTGGGTCGGTTGTTACGATTGCAGCAACTCTTTCTCACCAATAACTCCTTGACAGGGGAGATTCCTACAAACTTGACAAGTTGTTCTGATCTCAAAGGCTTATACTTAAGTGGAAATAATATGATTGGCAAAATACCAATTGGAATTGGCTCTCTTAAGAAGCTTCAACATTTGAGCATTGCAAAAAACAATTTAACTGGAGGAGTCACACCATTCATAGGGAATCTTTCATCCTTAACAACTCTTCATGTTGGTTATAACAACTTGGAGGGAGATATACCACAAGAATTATGTCTCCTAAAAAATTTGACAAAGATAATCGTGGAAGTCAACAAACTATCCGGTACAATTCCTACTTGTCTTTACAATATGTCATCTCTTACTGTGATCTCAATTACAATGAATCACTTTGATGGCTCTCTTCCACCCACCATGTTCCACACCCTCCCCAATCTCCAATTTTTTACAATTGGCAGGAATCAAATCTCAGGTCCAATCCCCACTTCCGTTGCAAATGCTTCTACCCTTGAAGTGCTCGATATATCTCAAAACCATTTCAGCAGACAAGTCCAAAGTCTAGGGAAGCTACCACATCTTTGGTATCTAAATATGCACTCAAACAATCTAGGTGACAACTCAGCTAAGGATTTGGAGATGTTAACATCATTGACAAACTGTAGTATGTTGAATGAGCTCGACATATCTGGCAATAATTTTGGAGGCCATTTACCAAAATCAGTGGGAAATTTGTCCACCCAACTCAGTGAACTTTATCTTGGGGGTAATCATATATCAGGGCAAATTCCTATTGAATTAGGAAATCTAATTAGCTTAATTCTTTTGACCATGGAAAGTAACCATTTGGAAGGGATAATTCCAGCTACTTTTGCAAAGTTTCAGAAGATGCAAGTGTTAGATTTGAGTGGAAACTACCTGGCAGGAGATATACCACCCTCCATAGGCAACCTCAGTCAATTGTATTATTTGGGAATAGGAGACAATTTGTTGGAAGGAAGTATTCCTCCAAACATAGGGAACTGCAAAAAATTACAATATCTAGATCTTTCGCAAAACAACCTTAAAGGAGACATACCCTTAGAGATTTTTAGTCTTTCGTCTTTAACGATGGGGCTGGACTTATCAAAAAACTCACTGAGTGGTAGTCTACCTAAGGAAGTGGGTCAGTTACAAAATATTGGGCTGTTTGATGTCTCTGAAAATCGTCTGTCTGGTGAAATTCCTGGAACCTTTGAAGGATGCACAAGCTTGGAGTCTCTTTATTTGCAAGGGAATCGCTTCCACGGAACCATACCGTCTTCTTTGGCTTCGCTCAAAGGCCTTCAACATTTAGACCTATCACGAAACAACTTATCAGGATCAATTCCTAAAGGTCTACAAAATATTTCTTCCTTGCAATACTTCAATGTATCTTTTAACATGTTGGACGGCAAGGTGCCAACTGAAGGCGTCTTTGGAAATGCAAGTGGGTTAGCAGTAATAGGAAACAATAACCTTTGTGGAGGTATTTCAAAGTTGCATCTATCGCCATGTCCCGTCAAAGGTACGAAACAAGTAAAACACCAAAATTTCAGGTTGATAGCAGTCATAGTTAGTGTTGTTGCTTTTCTTCTCATACTGCTATGTATTTTAACTATCTTCTGGGTGAGGAAAAGAAACAAGAAGCCATCTTCTTATTCACCAACAATTGATCAATTGGCAGTGGTTTCATATCAAAACCTTCACAATGGAACCGATGGGTTCTCAACAAAAAACTTGATTGGTTCTGGAAATTTTGGCTCTGTCTACAAAGGAACTCTTGATTCAGAAGATAGAGTTGTTGCCATAAAGGTCATAAACCTTCAAAAGAAGGGAGCTAACAAGAGTTTCATTGCCGAATGCAAAGCACTAAAAAATGTTAGACATCGAAATCTAGTTAAGATTTTAACATGTTGTTCCAGTACAGATTACAAAGGTCGAGAATTCAAAGCTCTAGTTTTTGAGTACATGGAGAATGGAAGCTTAGAAAGTTGGTTGCATTCCACAGCAGAAGCTACATATCAGCCCAAATCATTAAATCTTGAGCAAAGGTTAAATATTGTTGTTGATGTTGCTTCAGCATTTCACTATCTTCACTACGAATGTGAGCAGCCTGTCATTCATTGTGACATAAAGCCTAGCAATGTTCTTCTTGATGATTGCATGGTGGCTCACGTGAGTGATTTTGGCTTAGCAAGATTGCTCTCAAGTGTTGGAGTCTCACTGATGCAAAGTAGCACAATTGGAATAAAGGGGACAATTGGTTATGCACCCCCAGAGTATGGAATGGGTTCTGAGGTGTCAATTGAAGGCGACATGTATAGCTTTGGAATTCTAGTATTAGAAATGTTAACCGGAAGGAGACCCACAGATGAAATTTTTAAAGATGGTCATAACCTTCACAATTATGTCAAAGATTCAATTTCAAATGACTTTTTGCAGATTGTGGACCCGGCAATTCTCTCCTGTGGATTAGAACGTGCAACCGACATTGGCAACCTTGGCAATGTCCATCCTAATATGGAAAAATGTTTACTTTCACTTTTTAAGATTGCACTTGCCTGCTCAGTGGATTTACCAAAAGAAAGAATGAGTATGGTTGATGTCCTTAGGGAGCTTAATCTAATCAATAGTTTCTTTCCTTCGGGGTTCTAA

Protein Sequence

>Glyur004032s00041445.1
MWCGQNRTVALALGNHTDHLALLKFKESIPTDPYGVLDSWNSSTHFCNWDGITCSHIHLRVTELNLSGYHLHGPLSPHVGNLSFMRNLYLADNNFFGKIPQELGRLLRLRQLHLSNNSFEGEIPTNLTNCSNLRVLSLNGNSLTGKIPVQIGSLQKLEVFRIGRNNLTGGVSPFIGNLSSLTVLNVAYNNLQGDIPQELCLLKNLTMIVVGVNKLSGTFPSCLYNVSSLTVISISENHFDGSLPPNMFHTLPNLKYFEIGGNQISGPIPTSVANASTIVKLDISQNHFNGQVPSLGKLQHIQWLNIGKNNLGANSPKDLEMLTSLRNCSKLYVLSMSYNNFGGHLPNSVGNLSTQLSQLYLGGNHIYGQIPIELGNLISLILLAMENNRLEGMIPTTFAKLQKIQRLNLGGNKLSGEIPPSVGNLSQLYYLHIAGNMLEGSIPPSIGNCQKLQYLNLLQNNLEGDIPLEIFSLSSLTKGLDLSKNSLSGILPKEVGQLQNIVQFDVSENRLSGEIPGTIGECISLESLYLQGNLFRGTVPSTLASLKALQHLDLSRDNLSGSIPKGLQNISSLQYFNVSFNMLDGEVPTEGVFGNASGLAVTGNNNLCGGILELHLPPCPAKGMKPAKHHNFRLIAVIVTVVAFLLMLLFILTIFWMRKRNKKPSSNNSPTIDQLAKVSYQNLHNGTDGFSTRNLMGFGNFGSVYKGTLDSEDRVVAIKVLNLQKKGAHKSFVAECNALKNIRHRNLVKILTCCSSTDYNGQEFKALVFEYMENGSLEEWLHPRIGSVEELPKTLNLDQRLNIIIDVASALHYLHHECDQLVLHCDLKPSNVLLDDDMVAHVSDFGXARLVSTIDGTSHKETSGSTIGIKGTIGYAPPEYGLGSQVSTYGDMYSFGMLILEMLTGRRPTDEMFEDGQNLHNFVKISFLDNLVHVLDPHLVPRDEEAATEDGISGNLIPTVEKCFVSLFRIGLACSMESPKERMNIVDVTRELNIIKKAFLTDYNVQSQKTIATTLGNHTDHLALLKFKESIPTDPYGVLDSWNSSTHFCNWHGIKCSHMHQRVTELNLSRYHLHGSLSPHVGNLSFMRNLYLSDNSFFGKIPQELGRLLRLQQLFLTNNSLTGEIPTNLTSCSDLKGLYLSGNNMIGKIPIGIGSLKKLQHLSIAKNNLTGGVTPFIGNLSSLTTLHVGYNNLEGDIPQELCLLKNLTKIIVEVNKLSGTIPTCLYNMSSLTVISITMNHFDGSLPPTMFHTLPNLQFFTIGRNQISGPIPTSVANASTLEVLDISQNHFSRQVQSLGKLPHLWYLNMHSNNLGDNSAKDLEMLTSLTNCSMLNELDISGNNFGGHLPKSVGNLSTQLSELYLGGNHISGQIPIELGNLISLILLTMESNHLEGIIPATFAKFQKMQVLDLSGNYLAGDIPPSIGNLSQLYYLGIGDNLLEGSIPPNIGNCKKLQYLDLSQNNLKGDIPLEIFSLSSLTMGLDLSKNSLSGSLPKEVGQLQNIGLFDVSENRLSGEIPGTFEGCTSLESLYLQGNRFHGTIPSSLASLKGLQHLDLSRNNLSGSIPKGLQNISSLQYFNVSFNMLDGKVPTEGVFGNASGLAVIGNNNLCGGISKLHLSPCPVKGTKQVKHQNFRLIAVIVSVVAFLLILLCILTIFWVRKRNKKPSSYSPTIDQLAVVSYQNLHNGTDGFSTKNLIGSGNFGSVYKGTLDSEDRVVAIKVINLQKKGANKSFIAECKALKNVRHRNLVKILTCCSSTDYKGREFKALVFEYMENGSLESWLHSTAEATYQPKSLNLEQRLNIVVDVASAFHYLHYECEQPVIHCDIKPSNVLLDDCMVAHVSDFGLARLLSSVGVSLMQSSTIGIKGTIGYAPPEYGMGSEVSIEGDMYSFGILVLEMLTGRRPTDEIFKDGHNLHNYVKDSISNDFLQIVDPAILSCGLERATDIGNLGNVHPNMEKCLLSLFKIALACSVDLPKERMSMVDVLRELNLINSFFPSGF

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold04032	6974	16509	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005515 protein binding GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur004032s00041445.1	PF08263.7	LRRNT_2	17	55	1.80E-12
Glyur004032s00041445.1	PF00560.28	LRR_1	108	130	0.87
Glyur004032s00041445.1	PF00560.28	LRR_1	132	154	0.27
Glyur004032s00041445.1	PF13855.1	LRR_8	204	264	8.90E-07
Glyur004032s00041445.1	PF13855.1	LRR_8	380	438	1.40E-07
Glyur004032s00041445.1	PF13855.1	LRR_8	524	583	4.20E-09
Glyur004032s00041445.1	PF00069.20	Pkinase	693	912	5.80E-40
Glyur004032s00041445.1	PF08263.7	LRRNT_2	1019	1057	5.40E-11
Glyur004032s00041445.1	PF12799.2	LRR_4	1157	1198	1.00E-06
Glyur004032s00041445.1	PF13855.1	LRR_8	1206	1266	1.90E-06
Glyur004032s00041445.1	PF00560.28	LRR_1	1333	1354	0.71
Glyur004032s00041445.1	PF00560.28	LRR_1	1406	1427	0.22
Glyur004032s00041445.1	PF00560.28	LRR_1	1453	1474	0.04
Glyur004032s00041445.1	PF13855.1	LRR_8	1542	1585	6.80E-07
Glyur004032s00041445.1	PF00069.20	Pkinase	1693	1912	5.90E-42

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.515
SRR1783600	control	0.455
SRR1783602	moderate drought stress	0.543
SRR1811619	moderate drought stress	0.543

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.079
DRR006520	Root Summer glycyrrhizin high producing strain	0.087
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.009
DRR006523	Root Summer glycyrrhizin low producing strain	0.119
DRR006524	Root Summer glycyrrhizin low producing strain	0.107
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.266
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.276

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	5.460
SRR2868004	Drought Stress(Tissue:root)	4.183
SRR2967015	Control (Tissue:root)	6.505

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.520
SRR9715740	Leave	0.297
SRR9715741	Leave	0.709
SRR9715739	Root	0.200
SRR9715742	Root	0.333
SRR9715743	Root	0.416

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	2.512
SRR8400027	Control-Root	1.473