Gene detail information of Glyur004036s00042047.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G25630.14.00E-59fibrillarin 2
NRKHN31260.11.16E-79rRNA 2'-O-methyltransferase fibrillarin 2 [Glycine soja]
COGYP_001012254.15.00E-29fibrillarin [Hyperthermus butylicus DSM 5456]
Swissprottr|Q94AH9|MD36A_ARATH1.00E-72Mediator of RNA polymerase II transcription subunit 36a
trEMBLtr|I1MYV4|I1MYV4_SOYBN4.00E-80Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G02340.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold040361756522+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K14563NOP1, FBL EC:2.1.1.- Ribosome biogenesis in eukaryotes map03008


Gene Ontology

biological_process

GO:0006364  rRNA processing

GO:0008033  tRNA processing


molecular_function

GO:0003723  RNA binding

GO:0008168  methyltransferase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur004036s00042047.1PF01269.12Fibrillarin11121.60E-51


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control71.504
SRR1783600control72.773
SRR1783602moderate drought stress104.767
SRR1811619moderate drought stress103.589

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain125.939
DRR006520Root Summer glycyrrhizin high producing strain129.930
DRR006521Root Winter glycyrrhizin high producing strain59.120
DRR006522Root Winter glycyrrhizin high producing strain59.210
DRR006523Root Summer glycyrrhizin low producing strain114.415
DRR006524Root Summer glycyrrhizin low producing strain116.445
DRR006525Leaf Summer glycyrrhizin high producing strain32.683
DRR006526Leaf Summer glycyrrhizin high producing strain33.218

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)143.092
SRR2868004Drought Stress(Tissue:root)91.705
SRR2967015Control (Tissue:root)97.748

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave58.121
SRR9715740Leave60.202
SRR9715741Leave62.191
SRR9715739Root144.544
SRR9715742Root144.652
SRR9715743Root150.948

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h186.229
SRR8749028MeJA induced 9h57.711
SRR8749029MeJA induced 9h99.031
SRR8749030Uninduced11.874
SRR8749031Uninduced9.955
SRR8749032Uninduced33.825

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root126.439
SRR8400027Control-Root93.270

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved