Gene detail information of Glyur004037s00039974.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G13130.1 | 3.00E-174 | Cellulase (glycosyl hydrolase family 5) protein |
| NR | KEH20742.1 | 0 | cellulase (glycosyl hydrolase family 5) [Medicago truncatula] |
| COG | YP_003952726.1 | 9.00E-35 | cellulase [Stigmatella aurantiaca DW4/3-1] |
| trEMBL | tr|K7KQT2|K7KQT2_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G30691.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04037 | 10043 | 13195 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH5 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur004037s00039974.1 | PF00150.13 | Cellulase | 73 | 352 | 9.10E-26 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.652 |
| SRR1783600 | control | 8.670 |
| SRR1783602 | moderate drought stress | 15.210 |
| SRR1811619 | moderate drought stress | 15.267 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.194 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.991 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.572 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.465 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 18.773 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 19.088 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.903 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.935 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 31.871 |
| SRR2868004 | Drought Stress(Tissue:root) | 49.093 |
| SRR2967015 | Control (Tissue:root) | 65.187 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 7.994 |
| SRR9715740 | Leave | 8.628 |
| SRR9715741 | Leave | 11.556 |
| SRR9715739 | Root | 17.373 |
| SRR9715742 | Root | 7.655 |
| SRR9715743 | Root | 9.043 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 15.175 |
| SRR8749028 | MeJA induced 9h | 21.136 |
| SRR8749029 | MeJA induced 9h | 15.575 |
| SRR8749030 | Uninduced | 29.702 |
| SRR8749031 | Uninduced | 28.240 |
| SRR8749032 | Uninduced | 16.034 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 15.471 |
| SRR8400027 | Control-Root | 15.382 |