Gene detail information of Glyur004060s00046131.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G23730.1 | 1.00E-52 | xyloglucan endotransglucosylase/hydrolase 16 |
| NR | ACJ85206.1 | 2.36E-80 | unknown [Medicago truncatula] |
| Swissprot | tr|P35694|XTH2_SOYBN | 2.00E-79 | Xyloglucan endotransglucosylase/hydrolase 2 {ECO:0000250|UniProtKB:Q38857} (Precursor) |
| trEMBL | tr|B7FKC2|B7FKC2_MEDTR | 9.00E-81 | Putative uncharacterized protein {ECO:0000313|EMBL:ACJ85206.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04060 | 979 | 3049 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH16 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur004060s00046131.1 | PF00722.16 | Glyco_hydro_16 | 28 | 134 | 5.40E-29 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 69.256 |
| SRR1783600 | control | 68.267 |
| SRR1783602 | moderate drought stress | 22.528 |
| SRR1811619 | moderate drought stress | 22.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 68.248 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 66.675 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.304 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.238 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 84.979 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 86.037 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.689 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.428 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 113.694 |
| SRR2868004 | Drought Stress(Tissue:root) | 60.517 |
| SRR2967015 | Control (Tissue:root) | 51.704 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 55.582 |
| SRR9715740 | Leave | 56.918 |
| SRR9715741 | Leave | 66.439 |
| SRR9715739 | Root | 62.052 |
| SRR9715742 | Root | 47.235 |
| SRR9715743 | Root | 43.749 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 169.174 |
| SRR8749028 | MeJA induced 9h | 253.850 |
| SRR8749029 | MeJA induced 9h | 444.800 |
| SRR8749030 | Uninduced | 384.112 |
| SRR8749031 | Uninduced | 105.362 |
| SRR8749032 | Uninduced | 157.460 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 21.521 |
| SRR8400027 | Control-Root | 69.628 |