Gene detail information of Glyur004062s00046380.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G02070.1 | 8.00E-52 | indeterminate(ID)-domain 5 |
| NR | XP_006583684.1 | 2.87E-175 | PREDICTED: zinc finger protein JACKDAW-like isoform X1 [Glycine max] |
| Swissprot | tr|Q8GYC1|IDD4_ARATH | 5.00E-79 | Protein indeterminate-domain 4, chloroplastic {ECO:0000303|PubMed:16784536} (Precursor) |
| trEMBL | tr|K7L200|K7L200_SOYBN | 1.00E-175 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G19470.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04062 | 12242 | 16425 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur004062s00046380.1 | PF12171.3 | zf-C2H2_jaz | 91 | 114 | 6.80E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.154 |
| SRR1783600 | control | 7.103 |
| SRR1783602 | moderate drought stress | 10.800 |
| SRR1811619 | moderate drought stress | 10.532 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 19.995 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 19.723 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 16.635 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 15.771 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.795 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.093 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 26.496 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 26.431 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 3.931 |
| SRR2868004 | Drought Stress(Tissue:root) | 4.100 |
| SRR2967015 | Control (Tissue:root) | 3.975 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 7.344 |
| SRR9715740 | Leave | 9.083 |
| SRR9715741 | Leave | 6.891 |
| SRR9715739 | Root | 0.145 |
| SRR9715742 | Root | 1.854 |
| SRR9715743 | Root | 1.219 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 2.912 |
| SRR8400027 | Control-Root | 3.462 |