Gene detail

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Gene detail information of Glyur004079s00039152.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G24320.1	4.00E-145	Transducin/WD40 repeat-like superfamily protein
NR	XP_006584780.1	0	PREDICTED: WD repeat-containing protein 44-like [Glycine max]
COG	YP_001864640.1	7.00E-19	hypothetical protein Npun_F0966 [Nostoc punctiforme PCC 73102]
Swissprot	tr\|P49178\|GBB_MAIZE	4.00E-14	Guanine nucleotide-binding protein subunit beta
trEMBL	tr\|I1KPN8\|I1KPN8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G02990.1}

Sequence

Transcript Sequence

>Glyur004079s00039152.1
CTTGTCTACCGTACCAGAAGTGGGTGTGGGTAGGTATTCCTGTGGATGCACAGTTCAGACTGAACAAACANAACACAAGGCGAAGATCCCTATGAAATTGTTTGGATTTCTGCATCAAGGTCGAAACTTGAAGATGACCCAGCTGCTGTTTCAGATACCCTTTTCCCCCAAAATAAAGTAAAAAAAAATCCATTTTGTTTTGTTGTGAAGAAAAGAATCTGTGTGATATTAGAGGATACGGTGGGAATTGGGAAAAGGGTTGGGAGAGGATATGGGAGAGGATGAGGATCAATTCTATGACACCCGTGAGGAGTTGTGTTCTGTCTCTGATGGGGGTGATTGTTCTGAATCGGATGAATCTTGTTCTGGTGGTAATAATAATGAATATGTAACTAGGCACCAGGTTTGGACTAACAACCTTCAAAGTGTTCACCTACGACGCCTCAATTTCATAAGATGGATGGGTTTAGAGTCTGATACTGATGCCAATTCAATTGAGGGAGAGGGGTTGGGAGATCCATCTTGTGGGGTNGACCGAGTCACCACAACCAGTGGGGCTGTGCTGAGAAATTCGGTTGCTGCAGAGGGTATTCCCTTAACCTCAGACCAGATTGTGTTGGATTCCTTGTCAAATGAGGCTTCTAGTTCGCTACAAAATCGCGGTGATAGGGAGAATTTGGCGTGTATGATAAGGAATTTGGATGATGGAACACAGTATGTTGTGGATAAATTGGATCAAGATGGAGAGCTTAGCACCCTGCGTGTTCTGGGTTCCGACCAATTGATTAGCTTGGAAGAGTTTCATAGAAATATTGGGCCGTCACCGTTGGTTCGCAGACGTTTGCAGAGGGATGCTGAGAACACGAGATTCTTGGCTGTCGTTAAAAAGAAGATGAAGAGAGGTTGGCTAAGGAAACTGGATTCTGTGGCTTGTTTTTCTCATAGTCAAGGGCTTGCTGAAACTTACTGCAAAGACTTTGATTCAGTGGATGGAAGTGGGATGCAAAGAGTTCGAGTTCATCCACATAGGAAGCAATTTAAGGAGCTTTCCTCTCTTTATGCTGAACAGAAGTTTAAAGCACACAAGGGTATCATTTTGACAATGAAGTTCAGTCTTGATGGAAAGTATCTGGCTAGTGGTGGTGAAGATGGCATTGTACGTGTGTGGAAGGTGGTTGAGGATGAAAGATCAAATGAACTGGACATTCGGGACAGTGATCCATCAAATATATATTTCAAAATGAATAAATTTTCAAGTGTATCTCCCCTCGGTGTAGATAAAGAGAAATTAGTTAAAAGAGAGAAGTTGAGGAGATCGTCTGCTTCAACTTGTGTGGTTATCCCACCAAAGACCTTCCGCATATTGGGGAAACCTTTGCATGAATTCCACGGGCATAGTGGTGACATTTTAGACCTTGCATGGTCCAAAAGAGGGTTTCTACTGTCATCCTCTGCTGACAAGACAGTGCGCCTATGGCAAGTAGGGATTGAAAAATGTCTTAGAGTTTTCTCCCACAATAATTATGTGACGTGTGTCAATTTCAATCCTGTCAATGATAATTTTTTCATCAGTGGTTCAATTGACGGAAAAGTGCGCATCTGGGAAGTTCTTTACTGTCGGGTTGTCGATTACATTGATATTAGAGAGATAGTCACGGCTGTTTGCTTCCGCCCTGATGGAAAGGGCACAATTGTGGGTACCATGGCAGGCAATTGCCGTTTCTATGATATTCGAGGTAGTCATCTGCAATTGGATGCTCAGTTTTCTTTACAAGGCAAAAAGAAGACATCAGGGAAAAGGATCACCGGCTTTCAGTTTTCACCTAGTGACCCAAGCAAATTGCTGGTNGCTTCTGCTGATTCACATGTCTGTATACTCTCTGGAGTTGGTGTCATCTACAAATTCAAAGGCCTAAGAAGTGCAGGTCAGATGCATGCTTCCTTCACCTCTGACGGGAAACATATCGTCTCAGTTAGTGAGGGTTCAAATGTTTGTATCTGGAATCACACTGGCCAGGATAGGAATACCTCCAAAGCAAAGAAGGTTTGGTCTTCTGAGAGTTTCCTATCCCACAATGCAGCAATTGCCATACCTTGGTGCGGCATCGAGTCAACGCCGCTGTCCCCTTCACTGGGAGAAGGTCTGATTCACAGGTCATCCTTGTCTCCTCCTGATTGTTTCTTCCTGAGCCGTGGATTTCTGTCGGAGTTAGTCCCAAAGGTATCCGCAACATGGCCAGAGGAGGCACTCGTGGACTCGGTCTCAGGTCAAGCCGTTGTTTCTCCTACAATGGGTAAATCAGAGTACAGGTTCTTGAGAAGTGCTTGCAAGGGAATGTCTAATTCTCACTTGTGGGGCCAAGTAATTGTAACAGCAGGATGGGATGGATGCATAAGAGTGTACCAAAATTACGGGTTACCGGTTCGTGTTTGAAACACAAGCTTGGGTTCGTTTTTNGGGGCATTCGAAAAGTAAGTTACCATGCTCATATAGCAGCATTAAAGGGTTCTTGGATGCAGAGGAATTTGCTATATTACAAAGCTTCATCGTATAGCAGCCAGGAAAATTCTTCNGTTGCAATGTTACCTGCTTTGGTAACGGGGGAATTAATGCCCTCACGTATAATATTCTTTACACAAAGTCAAATGTAATACCAATTATATGATTCTTTTAATTTTTAAGGGCTGTCGGTTGAGAGGATGTAAGTNTCAGTTTTGCTGATGGTCCTAGTCAAATGTAATTCTTGATCATGTATAGTATATAGAAGAATTTTTTTTTTGTTTTTCA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold04079	8045	13313	-

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur004079s00039152.1	PF00400.27	WD40	266	300	1.80E-08
Glyur004079s00039152.1	PF00400.27	WD40	366	402	4.10E-09
Glyur004079s00039152.1	PF00400.27	WD40	408	445	1.60E-07
Glyur004079s00039152.1	PF00400.27	WD40	692	711	0.1

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.655
SRR1783600	control	3.568
SRR1783602	moderate drought stress	3.948
SRR1811619	moderate drought stress	3.843

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.838
DRR006520	Root Summer glycyrrhizin high producing strain	9.740
DRR006521	Root Winter glycyrrhizin high producing strain	8.635
DRR006522	Root Winter glycyrrhizin high producing strain	8.521
DRR006523	Root Summer glycyrrhizin low producing strain	17.264
DRR006524	Root Summer glycyrrhizin low producing strain	17.668
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.743
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.703

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	23.770
SRR2868004	Drought Stress(Tissue:root)	37.995
SRR2967015	Control (Tissue:root)	37.376

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	40.907
SRR9715740	Leave	42.143
SRR9715741	Leave	57.195
SRR9715739	Root	12.838
SRR9715742	Root	36.072
SRR9715743	Root	29.887

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.509
SRR8749028	MeJA induced 9h	12.206
SRR8749029	MeJA induced 9h	5.677
SRR8749030	Uninduced	17.506
SRR8749031	Uninduced	15.041
SRR8749032	Uninduced	7.915

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	22.710
SRR8400027	Control-Root	28.980