Gene detail

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Gene detail information of Glyur004082s00045808.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G14096.1	7.00E-26	F-box/RNI-like superfamily protein
NR	KEH38500.1	8.55E-180	F-box/RNI/FBD-like domain protein [Medicago truncatula]
Swissprot	tr\|Q94B46\|FBL74_ARATH	9.00E-28	F-box/LRR-repeat protein At4g14096
trEMBL	tr\|A0A072VK28\|A0A072VK28_MEDTR	3.00E-180	F-box/RNI/FBD-like domain protein {ECO:0000313\|EMBL:KEH38500.1}

Sequence

Transcript Sequence

>Glyur004082s00045808.1
ATGGAGCCTGCAGGTTCTTCTGTTGCTGGCTCTACCACACGAAAGGAAAAGCCTCATAAGAGGCAGAAGGCAAATGCAAGTGAAGACATAACCAGCAAGCTACCTGAAGCACTTATAAGTCACATTCTCTCTTTTATTCCAACCAAAGACGCAGCTCGTACGAGTGTGTTATCCAAGAGATGGATACACCGCTGGACAACAATCACCAAGCTGGACTTAGATGATACTGTGTTCTATTCTCCCAAGAGAAAAACGGGTGGAAAACAGTACTTTGTTAACTTTGTGTACAGGGCACTTCTTCTCACTAAAGGTTCAGGCATGGAAAGTTTTTCTCTTGTGATTGCTAACAAGTATGATGTGTCACTTCTAAATACATGGATCTCTAACATCTTGAACCGGGGTGTGAAAAATCTTCATATCTGTTCAAATTCTGAACTCCCCTTCTGTGTTCTTACATCTCAGTTACTTTTTAACTCCGTCTATTTAGAAGAATTGGTGCTGGAGATGTGTTGTTGTGCTATAAAAGTTATGCCTGTCTGTGTTAATTTTGGATACCTAAAACTCCTCAAGCTGTGTGGAATTGTATTTACCNTTGATTATCTGAGCCTTCATTTTCCAGTCCTCAAAAAGTTTGAGGCAAGACACTGCATTTGGTTAAGTGCACACAATGTCATTGTAGAAGCACCTCTACTTGAAAGCGTTTTCATAGAACAAGACCGTATGTCGGTATCTCANGAGCCGCGTAGCTGTGCAATCGAATTTCATGCTTTGCATTTGAAAGAATTCACTTATTTTGGTTGTGGTATATCACAACCCATTACTCTGTCAAATCCATCGTCAGCTTGTAANGCTTCTGTTACCATCATTTTAAATCTGCGTGAGATTAGAGTTCCAGAAACAGGATCCCTTGCTTTTCTCCTCTTTGAACAATTCAGTAAAGTGAAGTGCATCAAATTTGAGGGGTCGGAGGTTCTGACACAACCAAGAGTGGCTTCTTTGCCTATATTTGCAATGCTTAGCGATTTGGAGCTTGGCTCGGTTACTGGTGANGTTTTGTTAGGCATACTTCAAAAGTCACCAGTTCTCAAGACTCTAGTATTCAAGGGAATATCTAGATTTGACGAAGAGCTTCTGAATTCTGCTGTTGTGCCCGATTGTATTGCATCTAGTCTCCAGGTTGTGAAATTTGGAAAAGTTAATGGATCCGAGCATGAACTATTTTTAGCTAAGTTTTTTATGGAAAATGGNACGATGCTGGAGAGGATGAGTTTCTCGCTTGTTAGTCAATGGCTGGCAAAATCTAAGATTATGGAAGGTTTTAAGGAGAAGCTCTTCTCATTCAAGAAAGGTTTCTCTTTTGCTATTGGAGTATCTTTTATCGACCAAGATCTATTCAATTATGCTCCTGTGCCCGAATGTTTGGCATCTACTCTCGAGGATGTGGAATTTGAAGGAGTTGATGGAAACGAGCATCAACAGTTTTTATCTAATTATTTCATGGAAAAT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold04082	277	11599	+

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur004082s00045808.1	PF00646.28	F-box	32	61	0.00012
Glyur004082s00045808.1	PF08387.5	FBD	379	426	9.20E-11
Glyur004082s00045808.1	PF08387.5	FBD	468	502	0.00013

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.909
SRR1783600	control	0.804
SRR1783602	moderate drought stress	0.375
SRR1811619	moderate drought stress	0.416

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.571
DRR006520	Root Summer glycyrrhizin high producing strain	0.568
DRR006521	Root Winter glycyrrhizin high producing strain	3.163
DRR006522	Root Winter glycyrrhizin high producing strain	2.844
DRR006523	Root Summer glycyrrhizin low producing strain	0.320
DRR006524	Root Summer glycyrrhizin low producing strain	0.293
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.185
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.185

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	2.900
SRR2868004	Drought Stress(Tissue:root)	1.945
SRR2967015	Control (Tissue:root)	2.166

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.833
SRR9715740	Leave	0.252
SRR9715741	Leave	0.211
SRR9715739	Root	0.114
SRR9715742	Root	0.479
SRR9715743	Root	0.590

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.802
SRR8749028	MeJA induced 9h	2.426
SRR8749029	MeJA induced 9h	2.302
SRR8749030	Uninduced	0.496
SRR8749031	Uninduced	0.203
SRR8749032	Uninduced	0.223

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	2.624
SRR8400027	Control-Root	2.363