Gene detail information of Glyur004112s00042718.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G80290.2 | 2.00E-43 | Nucleotide-diphospho-sugar transferases superfamily protein |
| NR | XP_003588614.1 | 5.97E-69 | Exostosin-1a [Medicago truncatula] |
| Swissprot | tr|Q9C975|GT643_ARATH | 4.00E-52 | Glycosyltransferase family protein 64 C3 {ECO:0000303|PubMed:24905498} (Precursor) |
| trEMBL | tr|G7I564|G7I564_MEDTR | 2.00E-69 | Nucleotide-diphospho-sugar transferase-like protein {ECO:0000313|EMBL:AES58865.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04112 | 7574 | 9464 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT64 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur004112s00042718.1 | PF09258.5 | Glyco_transf_64 | 2 | 112 | 1.30E-23 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.140 |
| SRR1783600 | control | 0.110 |
| SRR1783602 | moderate drought stress | 0.246 |
| SRR1811619 | moderate drought stress | 0.207 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.826 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.517 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.455 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.326 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.879 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.563 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.369 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.418 |
| SRR2967015 | Control (Tissue:root) | 2.210 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.205 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.266 |
| SRR9715739 | Root | 0.014 |
| SRR9715742 | Root | 0.048 |
| SRR9715743 | Root | 0.018 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.023 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.023 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.738 |
| SRR8400027 | Control-Root | 0.075 |