Gene detail

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Gene detail information of Glyur004123s00044647.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G29420.1	3.00E-49	glutathione S-transferase tau 7
NR	XP_003623199.1	3.04E-131	Glutathione S-transferase [Medicago truncatula]
COG	YP_007067680.1	3.00E-21	glutathione S-transferase [Calothrix sp. PCC 7507]
Swissprot	tr\|P32110\|GSTX6_SOYBN	6.00E-112	Probable glutathione S-transferase
trEMBL	tr\|G7L6H3\|G7L6H3_MEDTR	1.00E-131	Glutathione S-transferase {ECO:0000313\|EMBL:AES79417.1}

Sequence

Transcript Sequence

>Glyur004123s00044647.2
CTTGTCACTTGTCGGTTAAATTACTCATTACTCATCGTGGGTTTATAAAAGAAGACCTCCATAGAGTAGGACTCAGCTGCCAAAATAAGTAACTTGATAGTGCTGTGATGGCTGCATGTGAGGGAGAGGTGAAGCTTTTGGGAGCTGTGGGAAGCCCATTTGTGATCCGGGTTCAGATTGCTCTCAAATTGAAGGGAGTTGAATACAAATATGAGGAAGAAAAGCTGGGCAACTTGAGTGATACACTCATCAAATACAACCCAGTTTACAAGATGGTTCCTGTGTTTCTTCACAATGGGAAACCCATATCAGAGTCCCGTGTGATTCTTGAGTACATCGATGAGACTTGGAAACATAACCCCATCTTGCCTTCTGATCCTTACCANAGANCCTTGGCTCGTTTCTGGTCCAAGTTCATAGATGACAAGTGTGTGGCTGCTGCATGGAAATCTGCTTTCATGGTTGATGAGAAAGAGCGTGAGAAGGCGCGTGAGGAATTATTTGAGGCTCTGCAGTTTCTNGAGAATGAGCTGAATGACAAGTTCTTNGGAGGAGGAGGAGAGGAGTTTGGGTTTGTAGATATTGCTGCTCTCTTCATCCCTTTATTCCAAGAAGTAGCAGAGATGCAATTGTTCACCAGTGAGAAATTTCCCAAGCTATACAAATGGAGCCAAGAATTTTACAACCATCCAGTTGTCAAAGAAACTATGCCTTCTAAAGACCAACTTTTTGGCTATTTCAAAGCTCGCGCTGAAAGCCTTGTTGCAAGTTTAAAAAAATAGATTAGTATAGAGTGAGAATCTGAATTTCTAAGGAAGTTTGTATAAACTACTTGGCATGCTGTTAGAATTTCTTTTCAAAATGAAATATCAGTCTAGGATTTCTCTCGTGTGATAGAAATCCTAGGAGCTTGTTGTCATTTTGCTATTTCAATTAATGATAAAAATAAGGTATTAGTAAACTGGCATTGATACTTCATATTAACATAGGTATGAGTAGAGTTTTCAAGCATGGATATCTATATATTTTGTTTTCACCCATAGTATCTCATGGGAAATGGCCCTGGANTAATCTGTGTTTGGCTAGGAGATAAGTAAAACATGGATACTTGTATGTATGTATGTCTAAGTAAAATAGATACAGGAATGCTAATGTNTTTTCAGATATAGTTTGGCATGCATGATTGGGAACTCATCAACAGAATTTAGGTTCTTCATGCT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold04123	1486	8698	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00799	GST, gst	EC:2.5.1.18	Glutathione metabolism	map00480
			Metabolism of xenobiotics by cytochrome P450	map00980
			Drug metabolism - cytochrome P450	map00982
			Chemical carcinogenesis	map05204
			Fluid shear stress and atherosclerosis	map05418
			Platinum drug resistance	map01524

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur004123s00044647.2	PF13417.1	GST_N_3	10	81	7.70E-15
Glyur004123s00044647.2	PF00043.20	GST_C	109	195	2.80E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	29.959
SRR1783600	control	29.874
SRR1783602	moderate drought stress	31.020
SRR1811619	moderate drought stress	30.704

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	37.685
DRR006520	Root Summer glycyrrhizin high producing strain	38.078
DRR006521	Root Winter glycyrrhizin high producing strain	18.150
DRR006522	Root Winter glycyrrhizin high producing strain	18.156
DRR006523	Root Summer glycyrrhizin low producing strain	29.673
DRR006524	Root Summer glycyrrhizin low producing strain	30.064
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.200
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.105

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	25.752
SRR2868004	Drought Stress(Tissue:root)	47.334
SRR2967015	Control (Tissue:root)	31.925

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	6.145
SRR9715740	Leave	5.323
SRR9715741	Leave	8.628
SRR9715739	Root	35.146
SRR9715742	Root	52.550
SRR9715743	Root	49.101

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.413
SRR8749028	MeJA induced 9h	7.773
SRR8749029	MeJA induced 9h	5.409
SRR8749030	Uninduced	2.345
SRR8749031	Uninduced	0.668
SRR8749032	Uninduced	1.185

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	58.217
SRR8400027	Control-Root	50.406