Gene detail information of Glyur004182s00042472.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G07690.12.00E-296-phosphogluconate dehydrogenase family protein
NRXP_007145582.17.72E-34hypothetical protein PHAVU_007G250600g [Phaseolus vulgaris]
Swissprottr|Q8S2G5|GPDH2_ORYSJ7.00E-35Probable glycerol-3-phosphate dehydrogenase [NAD(+)] 2, cytosolic
trEMBLtr|V7BLW0|V7BLW0_PHAVU3.00E-34Uncharacterized protein {ECO:0000313|EMBL:ESW17576.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold041827782365+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00006GPD1 EC:1.1.1.8 Glycerophospholipid metabolism map00564
MAPK signaling pathway - yeastmap04011


Gene Ontology

biological_process

GO:0006072  glycerol-3-phosphate metabolic process

GO:0055114  oxidation-reduction process


cellular_component

GO:0009331  glycerol-3-phosphate dehydrogenase complex


molecular_function

GO:0004367  glycerol-3-phosphate dehydrogenase [NAD+] activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
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Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control9.027
SRR1783600control7.119
SRR1783602moderate drought stress10.442
SRR1811619moderate drought stress8.275

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain12.040
DRR006520Root Summer glycyrrhizin high producing strain7.583
DRR006521Root Winter glycyrrhizin high producing strain11.979
DRR006522Root Winter glycyrrhizin high producing strain8.792
DRR006523Root Summer glycyrrhizin low producing strain0.289
DRR006524Root Summer glycyrrhizin low producing strain0.000
DRR006525Leaf Summer glycyrrhizin high producing strain6.362
DRR006526Leaf Summer glycyrrhizin high producing strain5.592

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.057
SRR2868004Drought Stress(Tissue:root)0.420
SRR2967015Control (Tissue:root)0.091

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave2.471
SRR9715740Leave2.147
SRR9715741Leave1.388
SRR9715739Root0.296
SRR9715742Root0.659
SRR9715743Root0.907

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.096
SRR8749028MeJA induced 9h0.154
SRR8749029MeJA induced 9h0.164
SRR8749030Uninduced0.048
SRR8749031Uninduced0.052
SRR8749032Uninduced0.383

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root12.419
SRR8400027Control-Root14.428

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved