Gene detail information of Glyur004188s00042959.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G66200.12.00E-108glutamine synthase clone F11
NRXP_004512771.15.13E-138PREDICTED: glutamine synthetase nodule isozyme-like [Cicer arietinum]
COGYP_007566085.14.00E-47glutamine synthetase II [Ilumatobacter coccineus YM16-304]
Swissprottr|Q43785|GLNA3_MEDSA9.00E-140Glutamine synthetase nodule isozyme
trEMBLtr|Q9SWY8|Q9SWY8_CANLI7.00E-137Glutamine synthetase {ECO:0000256|RuleBase:RU004356}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold041881246816169-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01915glnA, GLUL EC:6.3.1.2 Biosynthesis of amino acids map01230
Glyoxylate and dicarboxylate metabolismmap00630
Nitrogen metabolismmap00910
Alanine, aspartate and glutamate metabolismmap00250
Arginine biosynthesismap00220
Two-component systemmap02020
Glutamatergic synapsemap04724
GABAergic synapsemap04727


Gene Ontology

biological_process

GO:0006542  glutamine biosynthetic process

GO:0006807  nitrogen compound metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0004356  glutamate-ammonia ligase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur004188s00042959.1PF03951.14Gln-synt_N17958.90E-15
Glyur004188s00042959.1PF00120.19Gln-synt_C1032054.50E-12


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.521
SRR1783600control0.632
SRR1783602moderate drought stress0.784
SRR1811619moderate drought stress0.765

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.218
DRR006520Root Summer glycyrrhizin high producing strain0.327
DRR006521Root Winter glycyrrhizin high producing strain0.093
DRR006522Root Winter glycyrrhizin high producing strain0.106
DRR006523Root Summer glycyrrhizin low producing strain0.252
DRR006524Root Summer glycyrrhizin low producing strain0.299
DRR006525Leaf Summer glycyrrhizin high producing strain2.121
DRR006526Leaf Summer glycyrrhizin high producing strain2.037

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.492
SRR2868004Drought Stress(Tissue:root)0.241
SRR2967015Control (Tissue:root)0.372

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave1.047
SRR9715740Leave2.742
SRR9715741Leave2.434
SRR9715739Root0.072
SRR9715742Root0.459
SRR9715743Root0.542

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h1.065
SRR8749028MeJA induced 9h0.455
SRR8749029MeJA induced 9h1.412
SRR8749030Uninduced0.143
SRR8749031Uninduced0.052
SRR8749032Uninduced0.213

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root3.410
SRR8400027Control-Root2.544

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved