Gene detail

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Gene detail information of Glyur004197s00037427.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G13000.1	glucan synthase-like 12
NR	KHN24965.1	Callose synthase 3 [Glycine soja]
Swissprot	tr\|Q9LXT9\|CALS3_ARATH	Callose synthase 3
trEMBL	tr\|I1KZH4\|I1KZH4_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G47670.1}

Sequence

Transcript Sequence

>Glyur004197s00037427.1
ATGGTCTTCTATGAAAATGATCCGACCCTGAAGGGAAGGGTAAAGAAAAGTGATGCCCGTGAGATGCAGAGCTTTTATCAGCATTACTACAAAAAATATATCCAAGCTTTGCAAAATGCCGCCGATAAAGCTGACCGTGCACAGCTTACGAAGGCATATCAGACTGCTAATGTTCTTTTTGAGGTTTTGAAGGCTGTTAACATGACCCAATCTATGGAAGTTGATCGAGAGTGCAAATCAGGCGATCATGAGATTTCCCGAGGCATGATCCAAGCTTCTGTATATGCTCTTCGTAACACTAGGGGTCTTCCTTGGCCCAAGGACTACAAGAAAAAACAAGATGAAGACATTCTGGATTGGCTTGGGTCGATGTTTGGATTTCAGAAGCACAANGTTGCGAATCAGAGGGAGCATTTGATCTTATTGCTCGCTAATGTTCACATAAGACAATTTCCAAAGCCTGATCAGCAGCCGAGGTTGGATGAGCGTGCTCTGACAGAAGTGATGAAGAAACTGTTCAAGAATTACAAAAAATGGTGCAAATATTTGGGTCGGAAAAGTAGCCTTTGGTTACCTACCATACAGCAAGAAGTGCAGCAGCGCAAACTACTATATATGGGTCTATATCTTCTAATATGGGGTGAAGCCGCCAACCTAAGATTCATGCCAGAATGCCTTTGTTATATATATCACCATATGGCTTTTGAATTGTATGGTATGCTTGCCGGTAATGTCAGTCCAATGACTGGGGAGAATGTCAAGCCAGCTTACGGAGGTGAAGAGGAGGCTTTCTTAAGGAAAGTGGTCACTCCTATCTATAACGTGATTGCAGAGGAAGCTAAAAGGAGCAAAAAGGGTAGGTCTGCTGATTGTTTTCGGTTAGGCTGGCCAATGCGTGCTGATGCTGATTTCTTTTGCCTGCCATACGAACAGGTGCCTTATGACAAAACAAATGATGACAAGCCACCCAGCCGAGACAGATGGGTTGGGAAAGTGAATTTTGTCGAGATAAGGTCATTTTGGCATCTTTTCAGAAGTTTTGACCGCATGTGGAGTTTTTTCATTCTGTGTTTACAGGCTATGATTATTGTTGCTTGGAATGGATCTGGGGATCCAATTGCAATATTTAATGGTGATGTATTCAAGAAGGTGTTGAGTGTGTTTATTACAGCAGCTATATTGAAGTTTGGGCAAGCTGTTCTTGATGTGATCCTAAGTTGGAAAGCACAACGGACTGCAGCATGGGTGATTGTTCTATCAGTTACTTATGCTTATACTTGGGATAATCCTCCTGGGTTTGCTCAAACCATTAAAAGTTGGTTTGGAAGCAATTCAAGTGTACCTTCATTGTTTATTTTGGCTGTTGCTGTTTACCTGTCACCAAATATGCTTGCTGCAATATTCTTTCTGATCCCATTCATTCGTCGTTTTCTCGAGAGGTCAAACTATAGGATTGTGATGCTAATGATGTGGTGGTCACAGCCTCGTCTGTATGTTGGTAGGGGAATGCATGAGAGTTCATTTTCCCTTTTCAAGTACACAATGTTCTGGGTCCTCCTTATAATTACAAAGTTGGCTTTCAGTTACTATATAGAGATAAAACCTCTGGTGGGACCTACAAAAGCTATAATGAGTGTAAAAATCTCGACTTTCCAATGGCATGAATTCTTTCCCCATGCTAGAAACAATATTGGCGTTGTAGTTGCTCTTTGGGCTCCAATTATTCTGGTTTACTTTATGGATACCCAAATTTGGTATGCCATATTCTCAACCTTATTTGGTGGGATTTATGGTGCATTCCGTCGCCTGGGAGAGATCCCATCTAATAAAGGGAAGGAAGCTGCAAGGTTTGCACAATTGTGGAACCAAATAATAACTAGTTTCAGAGAGGAAGATCTTATTAGTGATAGGGAAATGGACCTTTTGCTTGTCCCTTATTGGGCTGATACTCAGTTGGACCTTATACAATGGCCCCCCTTTCTACTTGCTAGCAAGATCCCAATTGCATTAGATATGGCTAAGGACAGCAATGGAAAGGATCGAGAGCTAAAAAAAAGAATTGAGGCTGACAACTACATGTCTTGCGCTGTCCGTGAGTGCTATGCCTCATTTAAGAGCATTATTAAGCACTTGGTTCAAGGGGAACGAGAAACACGAGTTATAGAGGCCATGTTCACTGAGGTAGACACGCATATAGATGACGGTAAATTAATCAGTGAATTCAAAATGAGTGCTCTTCCTAGCCTCTATGGACAGTTTGTTCAGCTAATCAAATATTTGTTGGAAAATGATCCGAAAGATAGGGACCAAGTTGTGATTCTATTCCAGGACATGCTGGAGGTCGTGACCAGAGATATAATGATGGAGGATCAGGATCATAATATATTCAGTTTGGTAGATTCAAGTCATGGTGGTTCTGGACATGAGGGAATGCTTCACCTTGAGCCTGAGCCACAGCATCAGTTATTTGCATCTGAAGGAGCTATCAGGTTTCCAATTGAACCGCTTACTGCAGCTTGGACTGAAAAGATTAAACGACTTTTCTTGCTGCTTACGACAAAAGAATCTGCCATGGATGTACCATCTAACTTAGAAGCAAGAAGGCGTATTTCTTTTTTCTCAAATTCACTGTTTATGGACATGCCTATGGCACCAAAAGTTCGCAACATGCTTTCATTTTCGGTTTTAACACCATACTACACTGAAGAGGTTCTCTTCTCCTTACTTGATTTGGATTCGCCAAATGAAGATGGTGTTTCAATACTGTTTTACTTGCAAAAGATATATCCAGATGAGTGGACCAACTTTCTTCAGCGAGTGAAGTGCTCTAGTGAGGAGGAACTTAAAGGGAATGAATCTGATGAGTTAGAAGAAGAGCTTCGACTTTGGGCATCATACAGAGGGCAAACTTTGACTAGAACTGTAAGGGGTATGATGTATTATAGAAAAGCTTTGGAGCTTCAGGCTTTTCTTGATATGGCCAAAGACGAAGATTTGATGGAAGGATACAAAGCCATNGAAAACTCAGATGATCACTCAAGGGGGGAAAGGTCATTGTGGACACAGTGCCAAGCAGTAGCTGATATGAAATTTACATACGTGGTATCATGCCAACAATATGGCATTGATAAGCGATCTGGTTCTCCTCGTGCACAGGACATATTAAGGCTTATGACAAGATATCCCTCACTTCGAGTTGCCTTTATTGATGAGGTAGAGGAAACTGTCAAAGACAGCAAGAAAAAGATCAACAAGGTGTACTACTCTTGCTTGGTGAAGGCTATGCCAAAATCCGGTAGTTCTTCAGAGCCTGAGCAGGATCTGGACCAGCTGACAAATAACATTCTTAAGATGTTTATCCCATAG

Protein Sequence

>Glyur004197s00037427.1
MVFYENDPTLKGRVKKSDAREMQSFYQHYYKKYIQALQNAADKADRAQLTKAYQTANVLFEVLKAVNMTQSMEVDRECKSGDHEISRGMIQASVYALRNTRGLPWPKDYKKKQDEDILDWLGSMFGFQKHXVANQREHLILLLANVHIRQFPKPDQQPRLDERALTEVMKKLFKNYKKWCKYLGRKSSLWLPTIQQEVQQRKLLYMGLYLLIWGEAANLRFMPECLCYIYHHMAFELYGMLAGNVSPMTGENVKPAYGGEEEAFLRKVVTPIYNVIAEEAKRSKKGRSADCFRLGWPMRADADFFCLPYEQVPYDKTNDDKPPSRDRWVGKVNFVEIRSFWHLFRSFDRMWSFFILCLQAMIIVAWNGSGDPIAIFNGDVFKKVLSVFITAAILKFGQAVLDVILSWKAQRTAAWVIVLSVTYAYTWDNPPGFAQTIKSWFGSNSSVPSLFILAVAVYLSPNMLAAIFFLIPFIRRFLERSNYRIVMLMMWWSQPRLYVGRGMHESSFSLFKYTMFWVLLIITKLAFSYYIEIKPLVGPTKAIMSVKISTFQWHEFFPHARNNIGVVVALWAPIILVYFMDTQIWYAIFSTLFGGIYGAFRRLGEIPSNKGKEAARFAQLWNQIITSFREEDLISDREMDLLLVPYWADTQLDLIQWPPFLLASKIPIALDMAKDSNGKDRELKKRIEADNYMSCAVRECYASFKSIIKHLVQGERETRVIEAMFTEVDTHIDDGKLISEFKMSALPSLYGQFVQLIKYLLENDPKDRDQVVILFQDMLEVVTRDIMMEDQDHNIFSLVDSSHGGSGHEGMLHLEPEPQHQLFASEGAIRFPIEPLTAAWTEKIKRLFLLLTTKESAMDVPSNLEARRRISFFSNSLFMDMPMAPKVRNMLSFSVLTPYYTEEVLFSLLDLDSPNEDGVSILFYLQKIYPDEWTNFLQRVKCSSEEELKGNESDELEEELRLWASYRGQTLTRTVRGMMYYRKALELQAFLDMAKDEDLMEGYKAXENSDDHSRGERSLWTQCQAVADMKFTYVVSCQQYGIDKRSGSPRAQDILRLMTRYPSLRVAFIDEVEETVKDSKKKINKVYYSCLVKAMPKSGSSSEPEQDLDQLTNNILKMFIP

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold04197	2576	16084	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT48

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006075 (1->3)-beta-D-glucan biosynthetic process

cellular_component GO:0000148 1,3-beta-D-glucan synthase complex GO:0016020 membrane molecular_function GO:0003843 1,3-beta-D-glucan synthase activity "

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur004197s00037427.1	PF14288.1	FKS1_dom1	200	286	1.20E-29
Glyur004197s00037427.1	PF02364.10	Glucan_synthase	860	1095	5.50E-46

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.733
SRR1783600	control	16.745
SRR1783602	moderate drought stress	9.898
SRR1811619	moderate drought stress	10.038

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.216
DRR006520	Root Summer glycyrrhizin high producing strain	7.387
DRR006521	Root Winter glycyrrhizin high producing strain	0.803
DRR006522	Root Winter glycyrrhizin high producing strain	0.857
DRR006523	Root Summer glycyrrhizin low producing strain	4.187
DRR006524	Root Summer glycyrrhizin low producing strain	4.059
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.199
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.113

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	34.391
SRR2868004	Drought Stress(Tissue:root)	20.733
SRR2967015	Control (Tissue:root)	23.809

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	4.401
SRR9715740	Leave	1.191
SRR9715741	Leave	1.802
SRR9715739	Root	1.751
SRR9715742	Root	14.296
SRR9715743	Root	11.626

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	16.338
SRR8749028	MeJA induced 9h	21.663
SRR8749029	MeJA induced 9h	7.554
SRR8749030	Uninduced	1.016
SRR8749031	Uninduced	1.181
SRR8749032	Uninduced	1.755

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	31.734
SRR8400027	Control-Root	36.162