Gene detail

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Gene detail information of Glyur004216s00042925.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G33560.2	1.00E-103	BUB1-related (BUB1: budding uninhibited by benzymidazol 1)
NR	XP_003555313.1	0	PREDICTED: mitotic spindle checkpoint protein BUBR1-like [Glycine max]
Swissprot	tr\|O22806\|BUBR1_ARATH	2.00E-126	Mitotic spindle checkpoint protein BUBR1
trEMBL	tr\|I1ND06\|I1ND06_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G00930.1}

Sequence

Transcript Sequence

>Glyur004216s00042925.1
GAAAGAAGGATAAAAAAGAAGGAAGAAGACGACGAAGCATTTGACTGGAACAACAGCAACAACAATGGCGGAGTGGAAGAACGAGAAGGTGGACCCAGAGACGGAGTTTCTGTTGTCGAAGAGAAAGAGCAGTTACGAGTGGGAGACCTTCAAGGAAAACGTGAGGCCACTGAAGAGGGGACGCAACGTTAACCTTCTCAACCACTCCCTCAAGTCCCACACCGACAACTNCCTCAAGAAATCCCTACTCCAACACCGAAGGAAGCTTATTGAAGCCATCGATGAATACAAAGGCGAAGACCCTCTTCTCCCCTGGATACAATGTATGAAGTGGGTGCAGGAGGNGTTTCCACCGGGTGGAGACAGCTCGGGGCTGGTGGTGATTTACGAGCAGTGCGTGCGTGCCTTTTGGCATTCGGAGCGGTATAAGGATGATCTGCGCTATCTCAAAGTTTGGCTTGAATATGCGGATAATTGCTTTGACAAGGAAGTTATATATGCTTTTCTGGATGCAAATGGAATTGGAAAATCTCATTCCGATTTCTACATCTCTTATGCTTTGCACTTGGAATCTAAGAGCAAGTTTAAAGCCGCTAACCAGATATTCGAACTTGGCATATCGAGGAATGCTCAACCCATTGAAAAATTGAAAGCTGCTTATAGGAAATTTTTTGTACGCTCAATGACAAGGCCAAAAGCTATAGATGATTCAATGGAAAAACTGGCACCTGCGCGTAGCTTTGGAACTGTTCTTGCCAAGGGAGAAAATCGTGCACCGTTGGCCTCTTTGAACCGTGATCCCTCTGCTAAGAATGATAGGACTCATGCAGCTCCACTTTCCATCTATAAAGATTCAGCTGCCACTGGTGAGGCATGCCCACATCAGCCAGATATTCCACAGCGACCAGGGACTAGAACTGGAGGGNCTACTGCAAGTTCCTGCATCCCAGTGTTTGTTGATGAAGAATGTCAAGATTCACAAAGTCTGAAAGCAGAGGATTCCAAGTCCTCAAATTTGAAGATTAGGCAAGAAGAAGAAAGGGACATGAAAAGAGAAACAGAGTTACTAAGGAAGAATCCATTACGCAACTTTCCACTAANCAGCCTTCCCAGATAATTGAAACCTTTGAAAGGTCAATTAGCGGGCCAGCTTTTCCCTAG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold04216	5572	9259	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K02178	BUB1	EC:2.7.11.1	Cell cycle	map04110
			Cell cycle - yeast	map04111
			Meiosis - yeast	map04113
			Oocyte meiosis	map04114
			Progesterone-mediated oocyte maturation	map04914

Gene Ontology

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur004216s00042925.1	PF08311.7	Mad3_BUB1_I	63	185	3.40E-41

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.997
SRR1783600	control	5.835
SRR1783602	moderate drought stress	2.995
SRR1811619	moderate drought stress	2.980

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.001
DRR006520	Root Summer glycyrrhizin high producing strain	6.735
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	2.086
DRR006524	Root Summer glycyrrhizin low producing strain	2.127
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.715
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.710

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	20.034
SRR2868004	Drought Stress(Tissue:root)	7.839
SRR2967015	Control (Tissue:root)	10.201

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	4.087
SRR9715740	Leave	0.210
SRR9715741	Leave	0.952
SRR9715739	Root	1.364
SRR9715742	Root	2.009
SRR9715743	Root	2.652

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.948
SRR8749028	MeJA induced 9h	5.593
SRR8749029	MeJA induced 9h	5.124
SRR8749030	Uninduced	0.164
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.274

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	14.752
SRR8400027	Control-Root	11.027