Gene detail information of Glyur004220s00039045.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G66910.1 | 6.00E-103 | Protein kinase superfamily protein |
| NR | KHN10362.1 | 1.54E-172 | Putative receptor-like protein kinase [Glycine soja] |
| COG | YP_001958461.1 | 6.00E-29 | hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2] |
| Swissprot | tr|Q3ECH2|Y1670_ARATH | 7.00E-117 | Probable receptor-like protein kinase At1g67000 (Precursor) |
| trEMBL | tr|A0A072UC43|A0A072UC43_MEDTR | 1.00E-171 | Receptor-like kinase {ECO:0000313|EMBL:KEH27016.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04220 | 11484 | 12395 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | PPC:1.9.1 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur004220s00039045.1 | PF07714.12 | Pkinase_Tyr | 6 | 274 | 3.50E-45 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.063 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.401 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.359 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.975 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.017 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.005 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.000 |
| SRR2967015 | Control (Tissue:root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 23.354 |
| SRR9715740 | Leave | 41.979 |
| SRR9715741 | Leave | 31.727 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.136 |
| SRR9715743 | Root | 0.323 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.009 |
| SRR8400027 | Control-Root | 0.046 |