Gene detail

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Gene detail information of Glyur004250s00044095.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G47570.1	0	Leucine-rich repeat protein kinase family protein
NR	KHN36903.1	0	Putative LRR receptor-like serine/threonine-protein kinase [Glycine soja]
COG	YP_004775215.1	2.00E-56	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|C0LGP4\|Y3475_ARATH	0	Probable LRR receptor-like serine/threonine-protein kinase At3g47570 (Precursor)
trEMBL	tr\|K7M260\|K7M260_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G34310.2}

Sequence

Transcript Sequence

>Glyur004250s00044095.1
ATGTTTCCTACATTTTCATTTTGGTTATATCTTCTCTTTACTTACAACTTCAGCCAAAAAACAATTGCCTCCACATTAGGAAACGAGACCGACAATTTGTCTTTGCTCAAATTCAAGGAATCAATATCCAGTGACCCATATGAAGTCCTAGATTCTTGGAATAGTTCTACACACTTCTGCAAGTGGCATGGAATCACATGCAGCCGCATGCACCAAAGAGTTACAGAGTTGAACTTATCAGGATATCATTTGCATGGATCCTTGTCTCCCCATGTTGGCAATCTCTCTTTTATGAGAAACCTCTATCTTGCAGACAACGACTTCTTTGGAAAAATCCCACTGGAGCTGGGTCGATTGTTACGATTGCGTCAACTCCGTTTGTCCAATAATTCATTTGAAGGGGAGATTGTAACGGTACAGGGACCCATTACAGAGATTCCCACAAACTTAACAAATTGCTCCAATCTTAGAGCCTTATACTTGTATGGGAATAGTCTGACTGGCAAAATACCAATTCAAATCTTCTCTCTTCAAAAGCTTGAACTTTTTAGCATTTGGAGAAACAATTTAACCGGGGGAGTATCCCCGTTCATAGGGAACCTTTCATCCTTAACAACTCTTGATGTTGTTTCTAACAACTTAGAGGGAAATATACCACAAGAATTATGTCTCCTCAAAAACTTGACAAAGATAGGTGTTGGGGTCAACAAACTATCAGGTACAATTCCTACTTGTGTTTACAATATGTCATCTCTTACCTTTATCTCAGCTGCAAATAATCACTTTACTGGCTCTCTACCACCCAACATGTTCCATACCCTCCCCAATCTCCAATATTTTGCAATTGGCATGAATCAATTCTCAGGTCCAATTCCCACTTCTGTTGCAAATGCTTCTACCCTTGTACTGCTTGATATATCTGAAAACCATTTCAACGGACAAGTCCCAAGTCTAGGGAAGCTACCACATCTTCAATTGCTAAATATGCACTCAAACAATCTTGGTGACAATTCAACTAAGGATTTGGAGATGTTAACATCATTGACAAACAATAGTAAGTTATATGCGCTCGACATATTTAGCAATAATTTTGGAGGCCATTTACCAAAATCAGTAGGAAATTTGTCCACCCAACTCAGTCAACTTTATCTCGGGGGTAATCATATATCAGGGCAAATTCCTATTGAATTAGGAAATCTAATCAGCTTAATTCTTTTGACCATGGAGAATAATCGTTTGGAAGGTATAATTCCAGCTACATTTGCCAAGCTTCGGAAGATGCAATTGTTAGATTTTAGTGGAAACAAGCTGTCAGGAGATATACCACCCTCCATAGGCAACCTCAGTCAGTTGTTTCATTTGGGCATAGGAGACAATTTGTTTGAAGGAAATATTCCTCAGAGTACAGGGAACTGCCAAAAGTTACAATATCTAAATCTTTCTCAAAACAACCTTAAAGGAGACATACCCTCAGAGATTTTTAGTCTTTCGTCTTTAACAATGGGGCTGGACTTATCAAAAAACTCACTGAGCGGTAGTCTACCTAAGGAAGTGGGTCAATTACAAAATATTGTGCAGTTTGATGTCTCTGAAAATCGTCTGTCTGGTGAGATTCCTGGAACCATTGGAGGATGCACAAGCTTGGAGTCTCTTTATTTGCAAGAGAATCTCTTCCGTGGAACCATACCATCTACTTTAGCTTCGCTCAAAGGCCTTCAACATTTAGACCTATCACGAAACAACTTATCAGGTTCAATTCCTAAAGGCCTACAAAATATTTCTTTCCTAGAATACTTCAATGTATCTTTTAACATGTTGGATGGTGAGGTGCCAACTGAAGGCGTCTTTGGAAATGCAAGTGGGTTAGCAGTAACAGGAAACAATAACCTTTGTGGGGGTATTTCAGAGTTGCATCTACCGCCATGCCCTGCCAAAGGTATGAAGCTAGCAAAACACCATAATTTCAGGTTGATAGCAGTCGTAGTTAGTGTGGTTGCTTTTCTTGTCATATTGCTATTTATTCTAACTATCTTCTGGATGAGGAAAACAAACAAGAAGCCATATTCTAATTCACCAACAATTGATCAACTAGCTGTGGTTTCATATCAAAAGCTTCACAATGGAACTGATGGGTTCTCAACTAGAAACTTGATAGGTGCTGAAAATTTCGGCTCTGTCTGCAAAGGAACTCTTGACTCACAAGATAGAGTTGTTGCCATAAAGGTCCTAAATCTTCGAAAGAAGGGAGCTCACAAGAGTTTCATTTCTGAATGTAATGCACTCAAAAATATTAGACATCGAAATCTTGTTAAGATTTTAACATGTTGTTCCAGTACAGATTACAAAGGTCAAGAATTCAAAGCTCTAGTTTTTGAGTACATGGAGAATGGAAGCTTAGAAAGTTGGTTGCACCCCACACCAGAAACTACAAATCAGCCCAAATCATTAAATCTTGAGCAAGGGTTGAATATTATTGTTGATGTTGCTTCAGCATTTCATTATCTTCACTATGAATGTGAGCATCCTGTCATTCATTGTGATATAAAGCCTAGCAATGTTCTTCTTGATGATTGCGTGGTAGCTCACGTGAGTGATTTTGGCTTAGCAAGATTGCTCTCTTGTGTTGGAGTCTCAGTGGTGCAAAGTAGCACAACTGGAATAAAGGGGACAATTGGTTATGCACCCCCAGAGTATGGAATGGGTTCTGAGGTGTCAGTTGAAGGCGACATGTATAGCTTTGGAATTCTGGTATTAGAAATGTTAACCGGAAGGAGACCCACAGATGAAATTTTTAAAGATGGTCATAACCTTCACAATTATGTCAAAGATTCAATTTCAAACGACCTTTGGCAGATTGTGGACCCGGCAATTCTCTCCTGTGGATTAGAAAGTGCAACTGACATTGGCAACCTTGGCAATGTGCATCCTAATATGGAAAAATGTTTACTTTCACTTTTGAAGATTGCACTTGCCTGCTCAGTGGATTTACCAAAAGAAAGAATGAGTATGGTTGATGTCCTTAGGGAGCTTAATCTAATCAACAGTTTCTTTCCTTCGGGGTTCTAA

Protein Sequence

>Glyur004250s00044095.1
MFPTFSFWLYLLFTYNFSQKTIASTLGNETDNLSLLKFKESISSDPYEVLDSWNSSTHFCKWHGITCSRMHQRVTELNLSGYHLHGSLSPHVGNLSFMRNLYLADNDFFGKIPLELGRLLRLRQLRLSNNSFEGEIVTVQGPITEIPTNLTNCSNLRALYLYGNSLTGKIPIQIFSLQKLELFSIWRNNLTGGVSPFIGNLSSLTTLDVVSNNLEGNIPQELCLLKNLTKIGVGVNKLSGTIPTCVYNMSSLTFISAANNHFTGSLPPNMFHTLPNLQYFAIGMNQFSGPIPTSVANASTLVLLDISENHFNGQVPSLGKLPHLQLLNMHSNNLGDNSTKDLEMLTSLTNNSKLYALDIFSNNFGGHLPKSVGNLSTQLSQLYLGGNHISGQIPIELGNLISLILLTMENNRLEGIIPATFAKLRKMQLLDFSGNKLSGDIPPSIGNLSQLFHLGIGDNLFEGNIPQSTGNCQKLQYLNLSQNNLKGDIPSEIFSLSSLTMGLDLSKNSLSGSLPKEVGQLQNIVQFDVSENRLSGEIPGTIGGCTSLESLYLQENLFRGTIPSTLASLKGLQHLDLSRNNLSGSIPKGLQNISFLEYFNVSFNMLDGEVPTEGVFGNASGLAVTGNNNLCGGISELHLPPCPAKGMKLAKHHNFRLIAVVVSVVAFLVILLFILTIFWMRKTNKKPYSNSPTIDQLAVVSYQKLHNGTDGFSTRNLIGAENFGSVCKGTLDSQDRVVAIKVLNLRKKGAHKSFISECNALKNIRHRNLVKILTCCSSTDYKGQEFKALVFEYMENGSLESWLHPTPETTNQPKSLNLEQGLNIIVDVASAFHYLHYECEHPVIHCDIKPSNVLLDDCVVAHVSDFGLARLLSCVGVSVVQSSTTGIKGTIGYAPPEYGMGSEVSVEGDMYSFGILVLEMLTGRRPTDEIFKDGHNLHNYVKDSISNDLWQIVDPAILSCGLESATDIGNLGNVHPNMEKCLLSLLKIALACSVDLPKERMSMVDVLRELNLINSFFPSGF

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold04250	7726	14639	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005515 protein binding GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur004250s00044095.1	PF08263.7	LRRNT_2	29	68	6.80E-11
Glyur004250s00044095.1	PF00560.28	LRR_1	155	175	1.3
Glyur004250s00044095.1	PF13855.1	LRR_8	403	459	7.30E-07
Glyur004250s00044095.1	PF00560.28	LRR_1	474	495	0.0096
Glyur004250s00044095.1	PF13855.1	LRR_8	546	606	6.40E-08
Glyur004250s00044095.1	PF00069.20	Pkinase	715	944	1.40E-39

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.087
SRR1783600	control	0.072
SRR1783602	moderate drought stress	0.074
SRR1811619	moderate drought stress	0.087

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.106
DRR006520	Root Summer glycyrrhizin high producing strain	0.134
DRR006521	Root Winter glycyrrhizin high producing strain	0.036
DRR006522	Root Winter glycyrrhizin high producing strain	0.023
DRR006523	Root Summer glycyrrhizin low producing strain	0.106
DRR006524	Root Summer glycyrrhizin low producing strain	0.072
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.060
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.060

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	23.105
SRR2868004	Drought Stress(Tissue:root)	22.947
SRR2967015	Control (Tissue:root)	17.306

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.003
SRR9715740	Leave	0.106
SRR9715741	Leave	0.063
SRR9715739	Root	0.035
SRR9715742	Root	0.028
SRR9715743	Root	0.108

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.058
SRR8400027	Control-Root	0.091