Gene detail information of Glyur004265s00037612.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G15490.10UDP-glucose 6-dehydrogenase family protein
NRXP_003554799.10PREDICTED: UDP-glucose 6-dehydrogenase 1-like [Glycine max]
COGYP_003548756.10nucleotide sugar dehydrogenase [Coraliomargarita akajimensis DSM 45221]
Swissprottr|Q96558|UGDH1_SOYBN0UDP-glucose 6-dehydrogenase 1
trEMBLtr|I1N6A6|I1N6A6_SOYBN0UDP-glucose 6-dehydrogenase {ECO:0000256|PIRNR:PIRNR000124}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0426526294071+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00012UGDH, ugd EC:1.1.1.22 Pentose and glucuronate interconversions map00040
Ascorbate and aldarate metabolismmap00053
Amino sugar and nucleotide sugar metabolismmap00520


Gene Ontology

biological_process

GO:0055114  oxidation-reduction process


molecular_function

GO:0003979  UDP-glucose 6-dehydrogenase activity

GO:0016616  oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

GO:0051287  NAD binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur004265s00037612.1PF03721.9UDPG_MGDP_dh_N31857.90E-65
Glyur004265s00037612.1PF00984.14UDPG_MGDP_dh2093063.40E-31
Glyur004265s00037612.1PF03720.10UDPG_MGDP_dh_C3284515.80E-37


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control7.100
SRR1783600control7.148
SRR1783602moderate drought stress3.658
SRR1811619moderate drought stress3.620

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain22.815
DRR006520Root Summer glycyrrhizin high producing strain22.690
DRR006521Root Winter glycyrrhizin high producing strain0.155
DRR006522Root Winter glycyrrhizin high producing strain0.151
DRR006523Root Summer glycyrrhizin low producing strain9.150
DRR006524Root Summer glycyrrhizin low producing strain9.928
DRR006525Leaf Summer glycyrrhizin high producing strain4.684
DRR006526Leaf Summer glycyrrhizin high producing strain4.667

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)56.007
SRR2868004Drought Stress(Tissue:root)25.434
SRR2967015Control (Tissue:root)24.876

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave5.438
SRR9715740Leave0.732
SRR9715741Leave1.517
SRR9715739Root9.055
SRR9715742Root8.231
SRR9715743Root7.347

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h3.496
SRR8749028MeJA induced 9h1.731
SRR8749029MeJA induced 9h1.996
SRR8749030Uninduced0.112
SRR8749031Uninduced0.000
SRR8749032Uninduced0.089

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root13.311
SRR8400027Control-Root21.296

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved