Gene detail information of Glyur004283s00040900.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G31960.2 | 3.00E-45 | glucan synthase-like 3 |
| NR | XP_004491686.1 | 1.99E-56 | PREDICTED: callose synthase 3-like [Cicer arietinum] |
| Swissprot | tr|Q9SL03|CALS2_ARATH | 2.00E-51 | Callose synthase 2 |
| trEMBL | tr|A0A072TWC2|A0A072TWC2_MEDTR | 3.00E-55 | Glucan synthase-like protein {ECO:0000313|EMBL:KEH21471.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04283 | 457 | 1216 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT48 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur004283s00040900.1 | PF04652.11 | DUF605 | 44 | 98 | 1.10E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 19.660 |
| SRR1783600 | control | 20.042 |
| SRR1783602 | moderate drought stress | 8.927 |
| SRR1811619 | moderate drought stress | 8.779 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.766 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.854 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.393 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.188 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.053 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.173 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.461 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.333 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 25.400 |
| SRR2868004 | Drought Stress(Tissue:root) | 15.524 |
| SRR2967015 | Control (Tissue:root) | 18.943 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.037 |
| SRR9715740 | Leave | 0.949 |
| SRR9715741 | Leave | 0.743 |
| SRR9715739 | Root | 1.747 |
| SRR9715742 | Root | 13.443 |
| SRR9715743 | Root | 8.105 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.532 |
| SRR8749028 | MeJA induced 9h | 7.614 |
| SRR8749029 | MeJA induced 9h | 1.636 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.063 |
| SRR8749032 | Uninduced | 0.350 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 25.828 |
| SRR8400027 | Control-Root | 28.772 |