Gene detail information of Glyur004315s00043115.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G15800.1 | 3.00E-154 | Glycosyl hydrolase superfamily protein |
| NR | XP_003604379.1 | 0 | Glucan endo-1,3-beta-glucosidase [Medicago truncatula] |
| Swissprot | tr|Q9ZQG9|E1314_ARATH | 5.00E-113 | Glucan endo-1,3-beta-glucosidase 14 (Precursor) |
| trEMBL | tr|G7JGY3|G7JGY3_MEDTR | 0 | Glycoside hydrolase family 17 protein {ECO:0000313|EMBL:AES86576.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04315 | 4333 | 7985 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH17 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur004315s00043115.1 | PF00332.13 | Glyco_hydro_17 | 55 | 373 | 1.30E-93 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.076 |
| SRR1783600 | control | 1.107 |
| SRR1783602 | moderate drought stress | 1.225 |
| SRR1811619 | moderate drought stress | 1.309 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.520 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.421 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.662 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.509 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.642 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.917 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 5.501 |
| SRR2868004 | Drought Stress(Tissue:root) | 5.914 |
| SRR2967015 | Control (Tissue:root) | 4.918 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.820 |
| SRR9715740 | Leave | 0.089 |
| SRR9715741 | Leave | 0.413 |
| SRR9715739 | Root | 0.280 |
| SRR9715742 | Root | 1.650 |
| SRR9715743 | Root | 1.063 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.621 |
| SRR8400027 | Control-Root | 1.347 |