Gene detail information of Glyur004337s00047558.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G36020.15.00E-16cold shock domain protein 1
NRXP_007137378.16.07E-53hypothetical protein PHAVU_009G122300g [Phaseolus vulgaris]
COGYP_003212288.11.00E-19RNA chaperone/anti-terminator [Cronobacter turicensis z3032]
Swissprottr|O65639|CSP1_ARATH3.00E-29Cold shock protein 1
trEMBLtr|V7AUP7|V7AUP7_PHAVU2.00E-53Uncharacterized protein {ECO:0000313|EMBL:ESW09372.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0433776118141+


Gene family

Gene familysubfamily
Transcription Factors FamilyCSD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated


molecular_function

GO:0003676  nucleic acid binding

GO:0003677  DNA binding

GO:0008270  zinc ion binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur004337s00047558.1PF00313.17CSD8725.70E-23
Glyur004337s00047558.1PF00098.18zf-CCHC1211377.80E-08
Glyur004337s00047558.1PF00098.18zf-CCHC1571731.00E-08


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control6.403
SRR1783600control5.571
SRR1783602moderate drought stress9.090
SRR1811619moderate drought stress9.326

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain10.325
DRR006520Root Summer glycyrrhizin high producing strain10.945
DRR006521Root Winter glycyrrhizin high producing strain1.083
DRR006522Root Winter glycyrrhizin high producing strain0.943
DRR006523Root Summer glycyrrhizin low producing strain10.209
DRR006524Root Summer glycyrrhizin low producing strain11.769
DRR006525Leaf Summer glycyrrhizin high producing strain56.017
DRR006526Leaf Summer glycyrrhizin high producing strain52.684

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)25.482
SRR2868004Drought Stress(Tissue:root)28.816
SRR2967015Control (Tissue:root)32.390

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave50.572
SRR9715740Leave92.017
SRR9715741Leave37.411
SRR9715739Root11.648
SRR9715742Root6.504
SRR9715743Root6.668

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h5.040
SRR8749028MeJA induced 9h8.834
SRR8749029MeJA induced 9h6.498
SRR8749030Uninduced1.487
SRR8749031Uninduced0.419
SRR8749032Uninduced1.508

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root15.351
SRR8400027Control-Root17.440

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved