Gene detail information of Glyur004372s00041124.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G43000.1 | 7.00E-22 | NAC domain containing protein 42 |
| NR | XP_007141427.1 | 2.21E-33 | hypothetical protein PHAVU_008G194600g [Phaseolus vulgaris] |
| Swissprot | tr|Q9SK55|NAC42_ARATH | 4.00E-26 | Transcription factor JUNGBRUNNEN 1 |
| trEMBL | tr|V7BAC6|V7BAC6_PHAVU | 8.00E-34 | Uncharacterized protein {ECO:0000313|EMBL:ESW13421.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04372 | 7556 | 8647 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | NAC |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur004372s00041124.1 | PF02365.10 | NAM | 20 | 66 | 1.30E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.154 |
| SRR1783600 | control | 0.155 |
| SRR1783602 | moderate drought stress | 0.163 |
| SRR1811619 | moderate drought stress | 0.160 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.015 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 2.101 |
| SRR2868004 | Drought Stress(Tissue:root) | 2.519 |
| SRR2967015 | Control (Tissue:root) | 3.141 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.650 |
| SRR9715740 | Leave | 1.714 |
| SRR9715741 | Leave | 3.795 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.921 |
| SRR9715743 | Root | 0.130 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.853 |
| SRR8749028 | MeJA induced 9h | 5.381 |
| SRR8749029 | MeJA induced 9h | 3.985 |
| SRR8749030 | Uninduced | 3.088 |
| SRR8749031 | Uninduced | 5.656 |
| SRR8749032 | Uninduced | 3.053 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 10.380 |
| SRR8400027 | Control-Root | 5.558 |