Gene detail information of Glyur004397s00042705.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G67170.2 | 7.00E-112 | SEC-C motif-containing protein / OTU-like cysteine protease family protein |
| NR | XP_006600943.1 | 0 | PREDICTED: OTU domain-containing protein 3-like isoform X5 [Glycine max] |
| trEMBL | tr|K7MM33|K7MM33_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G18666.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04397 | 4809 | 10587 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | OTU |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur004397s00042705.1 | PF02338.14 | OTU | 48 | 159 | 9.10E-20 |
| Glyur004397s00042705.1 | PF02810.10 | SEC-C | 309 | 327 | 8.10E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.566 |
| SRR1783600 | control | 7.925 |
| SRR1783602 | moderate drought stress | 10.920 |
| SRR1811619 | moderate drought stress | 10.683 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.657 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.050 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.828 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.737 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.879 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.690 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.720 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.189 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 12.965 |
| SRR2868004 | Drought Stress(Tissue:root) | 14.160 |
| SRR2967015 | Control (Tissue:root) | 16.394 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.560 |
| SRR9715740 | Leave | 4.487 |
| SRR9715741 | Leave | 3.875 |
| SRR9715739 | Root | 0.126 |
| SRR9715742 | Root | 2.831 |
| SRR9715743 | Root | 1.403 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 12.042 |
| SRR8749028 | MeJA induced 9h | 11.837 |
| SRR8749029 | MeJA induced 9h | 11.830 |
| SRR8749030 | Uninduced | 10.406 |
| SRR8749031 | Uninduced | 12.452 |
| SRR8749032 | Uninduced | 10.219 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 11.790 |
| SRR8400027 | Control-Root | 11.548 |