Gene detail information of Glyur004402s00039608.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G29090.1 | 8.00E-15 | Ribonuclease H-like superfamily protein |
| NR | XP_008245529.1 | 2.66E-30 | PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103343662 [Prunus mume] |
| Swissprot | tr|P0C2F6|RNHX1_ARATH | 2.00E-12 | Putative ribonuclease H protein At1g65750 |
| trEMBL | tr|M5X5N4|M5X5N4_PRUPE | 9.00E-28 | Uncharacterized protein {ECO:0000313|EMBL:EMJ20801.1} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04402 | 9231 | 10877 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.314 |
| SRR1783600 | control | 0.450 |
| SRR1783602 | moderate drought stress | 0.743 |
| SRR1811619 | moderate drought stress | 0.721 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.072 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.034 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.049 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.204 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.203 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.141 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.760 |
| SRR2967015 | Control (Tissue:root) | 1.211 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.003 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.010 |
| SRR9715743 | Root | 0.003 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.276 |
| SRR8749028 | MeJA induced 9h | 4.830 |
| SRR8749029 | MeJA induced 9h | 3.709 |
| SRR8749030 | Uninduced | 5.173 |
| SRR8749031 | Uninduced | 4.895 |
| SRR8749032 | Uninduced | 1.971 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.313 |
| SRR8400027 | Control-Root | 0.272 |