Gene detail information of Glyur004422s00040310.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G30970.23.00E-154aspartate aminotransferase 1
NRXP_007134682.10hypothetical protein PHAVU_010G067200g [Phaseolus vulgaris]
COGYP_001343275.16.00E-93aromatic amino acid aminotransferase [Marinomonas sp. MWYL1]
Swissprottr|P46643|AAT1_ARATH0Aspartate aminotransferase, mitochondrial (Precursor)
trEMBLtr|V7AR51|V7AR51_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW06676.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0442223496290+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K14455GOT2 EC:2.6.1.1 Carbon metabolism map01200
2-Oxocarboxylic acid metabolismmap01210
Biosynthesis of amino acidsmap01230
Carbon fixation in photosynthetic organismsmap00710
Alanine, aspartate and glutamate metabolismmap00250
Cysteine and methionine metabolismmap00270
Arginine biosynthesismap00220
Arginine and proline metabolismmap00330
Tyrosine metabolismmap00350
Phenylalanine metabolismmap00360
Phenylalanine, tyrosine and tryptophan biosynthesismap00400
Isoquinoline alkaloid biosynthesismap00950
Tropane, piperidine and pyridine alkaloid biosynthesismap00960
Fat digestion and absorptionmap04975


Gene Ontology

biological_process

GO:0006520  cellular amino acid metabolic process

GO:0009058  biosynthetic process


molecular_function

GO:0003824  catalytic activity

GO:0008483  transaminase activity

GO:0030170  pyridoxal phosphate binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur004422s00040310.1PF00155.16Aminotran_1_2494145.00E-67


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control2.947
SRR1783600control3.010
SRR1783602moderate drought stress3.100
SRR1811619moderate drought stress3.034

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain3.287
DRR006520Root Summer glycyrrhizin high producing strain3.622
DRR006521Root Winter glycyrrhizin high producing strain66.931
DRR006522Root Winter glycyrrhizin high producing strain63.802
DRR006523Root Summer glycyrrhizin low producing strain18.918
DRR006524Root Summer glycyrrhizin low producing strain18.520
DRR006525Leaf Summer glycyrrhizin high producing strain0.403
DRR006526Leaf Summer glycyrrhizin high producing strain0.404

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)2.777
SRR2868004Drought Stress(Tissue:root)2.582
SRR2967015Control (Tissue:root)1.918

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.632
SRR9715740Leave0.586
SRR9715741Leave0.162
SRR9715739Root0.927
SRR9715742Root1.609
SRR9715743Root1.305

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h110.830
SRR8749028MeJA induced 9h362.980
SRR8749029MeJA induced 9h215.818
SRR8749030Uninduced189.004
SRR8749031Uninduced143.653
SRR8749032Uninduced88.949

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root12.661
SRR8400027Control-Root14.342

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved